View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_175 (Length: 288)

Name: NF9985A_low_175
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_175
NF9985A_low_175
[»] chr6 (1 HSPs)
chr6 (17-288)||(3703927-3704198)
[»] chr2 (2 HSPs)
chr2 (17-288)||(20098875-20099146)
chr2 (147-211)||(9039111-9039175)
[»] chr5 (1 HSPs)
chr5 (17-288)||(32069037-32069308)
[»] scaffold0129 (1 HSPs)
scaffold0129 (18-144)||(15174-15304)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 3704198 - 3703927
Alignment:
Q  17 ggacatcctcactaagatgtttccaagcaaaactcgtgcaagaatcatgcacctcaaagaaagactttctcgatccacaaaaggatcgaaatccatctct 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3704198 ggacatcctcactaagatgtttgcaagcaaaactcgtgcaagaatcatgcacctcaaagaaagactttctcgatccacaaaaggatcgaaatccatctct 3704099  T
Q  117 gaataccttcatggtatcaaggctttattagatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatggtctcg 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3704098 gaataccttcatggtatcaaggctttatcagatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatggtctcg 3703999  T
Q  217 gtaatgagtaccgtgaggtcactgctgctataagaactagagaaaatcccattggatttgatgatcttcatg 288  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3703998 gtaatgagtaccgtgaggtcactgctgctataagaaccagagaaaatcccattggatttgatgatcttcatg 3703927  T

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Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 20099146 - 20098875
Alignment:
Q  17 ggacatcctcactaagatgtttccaagcaaaactcgtgcaagaatcatgcacctcaaagaaagactttctcgatccacaaaaggatcgaaatccatctct 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20099146 ggacatcctcactaagatgtttgcaagcaaaactcgtgcaagaatcatgcacctcaaagaaagactttctcgatccacaaaaggatcaaaatccatctct 20099047  T
Q  117 gaataccttcatggtatcaaggctttattagatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatggtctcg 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20099046 gaataccttcatggtatcaaggctttatcagatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatggtctcg 20098947  T
Q  217 gtaatgagtaccgtgaggtcactgctgctataagaactagagaaaatcccattggatttgatgatcttcatg 288  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20098946 gtaatgagtaccgtgaggtcactgctgctataagaaccagagaaaatcccattggatttgatgatcttcatg 20098875  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 9039175 - 9039111
Alignment:
Q  147 gatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatgg 211  Q
    |||||||||||||||||||| || ||  | ||||||||||||||||| || |||||  |||||||    
T  9039175 gatgaattagccatcatcaattcaccattggatgatgtggatcttgtcattcacaccctgaatgg 9039111  T

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Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 32069037 - 32069308
Alignment:
Q  17 ggacatcctcactaagatgtttccaagcaaaactcgtgcaagaatcatgcacctcaaagaaagactttctcgatccacaaaaggatcgaaatccatctct 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  32069037 ggacatcctcactaagatgtttgcaagcaaaactcgtgcaagaatcatgcacctcaaaggaagactttctcgatccacaaaaggatcaaaatccatctct 32069136  T
Q  117 gaataccttcatggtatcaaggctttattagatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatggtctcg 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32069137 gaataccttcatggtatcaaggctttatcagatgaattagccatcatcaactctccccttgatgatgtggatcttgttatccacactttgaatggtctcg 32069236  T
Q  217 gtaatgagtaccgtgaggtcactgctgctataagaactagagaaaatcccattggatttgatgatcttcatg 288  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32069237 gtaatgagtaccgtgaggtcactgctgctataagaaccagagaaaatcccattggatttgatgatcttcatg 32069308  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 15304 - 15174
Alignment:
Q  18 gacatcctcactaagatgtttccaagcaaaactcgtgcaagaatcatgcacctcaaagaaagactttctc----gatccacaaaaggatcgaaatccatc 113  Q
    ||||| |||||| |||||||| |||||| ||||| ||||| ||||||| |||| ||| | ||||| | |     ||| ||  ||| |||| ||||||||     
T  15304 gacattctcactgagatgtttgcaagcataactcatgcaataatcatgtacctaaaaaagagactctatatatagattcatcaaaagatcaaaatccata 15205  T
Q  114 tctgaataccttcatggtatcaaggctttat 144  Q
    ||||||||||||||| |||| ||||||||||    
T  15204 tctgaataccttcatagtatgaaggctttat 15174  T

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