View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_178 (Length: 288)
Name: NF9985A_low_178
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_178 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 7153731 - 7153451
Alignment:
| Q |
8 |
atggtgttagtagagactggtcaaacgcagagacatacaagcggaagaggaatggaggacttagacagactcaatgactttatgcatttaactagaagtg |
107 |
Q |
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| T |
7153731 |
atggtgttagtagagactggtcaaacgtagagacatacaagcggaagaggaatggaggacttagacagactcaataactttatgcatttaactagaagtg |
7153632 |
T |
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| Q |
108 |
caactttatgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactggaaattcaactttgtgtattttgagt |
207 |
Q |
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| T |
7153631 |
caactttatgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactagaaattcaactttgtgtattttgagt |
7153532 |
T |
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| Q |
208 |
acaattttgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttga |
288 |
Q |
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| T |
7153531 |
acaattttgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttga |
7153451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 13237353 - 13237073
Alignment:
| Q |
8 |
atggtgttagtagagactggtcaaacgcagagacatacaagcggaagaggaatggaggacttagacagactcaatgactttatgcatttaactagaagtg |
107 |
Q |
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| T |
13237353 |
atggtgttagtagagactggtcaaacgtagagacatacaagcggaagaggaatggaggacttagacagactcaataactttatgcatttaactagaagtg |
13237254 |
T |
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| Q |
108 |
caactttatgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactggaaattcaactttgtgtattttgagt |
207 |
Q |
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| T |
13237253 |
caactttatgcatttaattagaagtgaaactttatgcattttttaaaacaagtgcaactttatgtacttgactagaaattcaactttgtgtattttgagt |
13237154 |
T |
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| Q |
208 |
acaattttgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttga |
288 |
Q |
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| T |
13237153 |
acaattttgatttatgtattttgatcacaaatgcaactttatatatgttgatctataattgttaaccttacttcaatttga |
13237073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 12316323 - 12316183
Alignment:
| Q |
63 |
aggacttagacagactcaatgactttatgcatttaactagaagtgcaactttatgcatttaattagaagtgaaactttatgcattttttaaaacaagtgc |
162 |
Q |
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| T |
12316323 |
aggacttacacaaactcaattatggtatgcatttagttagaagagcagctttatgcattttattagaagtgcaattttatggatttttcaaaacaagtgc |
12316224 |
T |
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| Q |
163 |
aactttatgtacttgactggaaattcaactttgtgtatttt |
203 |
Q |
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| T |
12316223 |
aactttatgtacttgaatagaaatctaactttgtgtatttt |
12316183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 8704752 - 8704701
Alignment:
| Q |
65 |
gacttagacagactcaatgactttatgcatttaactagaagtgcaactttat |
116 |
Q |
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| T |
8704752 |
gacttagatagactcaatgactttatgcatttcactagaattgcaattttat |
8704701 |
T |
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