View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_183 (Length: 286)
Name: NF9985A_low_183
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_183 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 13704215 - 13704473
Alignment:
| Q |
22 |
caaagaagcttgcttttcaaagaatcaagaaagaaatttaataaagagaaagatgatgaaccaactttgaataagcccgaatatagaaagagttatgggt |
121 |
Q |
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| T |
13704215 |
caaagaagcttgcatgataaagaatgaagaacaaaatttgataaagagaaagatgatgaaccaactttgaatatgcccaactatagaaagagttacaggc |
13704314 |
T |
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| Q |
122 |
gtggaagaggacttattggtgctagaagtcgtgaagaataaaacaggcaagtgaagtggctgaatgctacaaatgtgacaaacaagggtattattagaat |
221 |
Q |
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| T |
13704315 |
gtggaataggacttattggtgctagaagacgtgaagagtaaaacaggcaagtgaactggctgaatgctacaaacgtgacaaacaagggtattattagaat |
13704414 |
T |
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| Q |
222 |
gaatgtcccaactgggaaagtgaaaatgcaaattttactgagtttgttgatacagaaga |
280 |
Q |
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| T |
13704415 |
gaatgtcccaattgggaaattgaaaatgcaaattttactgagtttggtgatacagaaga |
13704473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 24658830 - 24658787
Alignment:
| Q |
214 |
attagaatgaatgtcccaactgggaaagtgaaaatgcaaatttt |
257 |
Q |
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| T |
24658830 |
attagaatgaatgtcccattcgggaaagtgaaaatgcaaatttt |
24658787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 35371965 - 35371885
Alignment:
| Q |
182 |
tgaatgctacaaatgtgacaaacaagggtattattagaatgaatgtcccaactgggaaagtgaaaatgcaaattttactga |
262 |
Q |
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| T |
35371965 |
tgaatgttataagtgtcacaaactggggcattatcataatgaatgtcctagccgggaaagtgaaaatgcaaattttgctga |
35371885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 2610076 - 2610036
Alignment:
| Q |
217 |
agaatgaatgtcccaactgggaaagtgaaaatgcaaatttt |
257 |
Q |
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| T |
2610076 |
agaatgaatgtcccaatcgggaaagtaaaaatgcaaatttt |
2610036 |
T |
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