View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_186 (Length: 284)
Name: NF9985A_low_186
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_186 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 32069633 - 32069369
Alignment:
| Q |
20 |
gaggcacccgagtccaatatccaatctgagacccctggtggcatggcacgggcgtgtagggcagtggcaacgttcctttttgaaggatgtccatgcaact |
119 |
Q |
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| T |
32069633 |
gaggcacccgaatccaatatccaatctgagacccctggtggcatggcacaggcgtgtagggcagtggcagtgttcctttttgaaggatgtccatgcaact |
32069534 |
T |
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| Q |
120 |
tgtaacaagttttagctgtatgattaggtctatcacaaaattggcaaattacccgctttgaagaggttggtgaagttgattgggaataagctggattcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
32069533 |
tgtaacaagttttagctgtatgattaggtctatcacaaaattggcaaattacccgctttgaagaggttggtgaagttgattgagaataagctggattgaa |
32069434 |
T |
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| Q |
220 |
aacctgctttccagttttgttgtaaaactatttgcctctttgtgcagtatttgcagtagcaataa |
284 |
Q |
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| T |
32069433 |
aatctgctttccagttttgttgtaaaactgtttgcctctctgtgcagtatttgcagtagcaataa |
32069369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 3703602 - 3703866
Alignment:
| Q |
20 |
gaggcacccgagtccaatatccaatctgagacccctggtggcatggcacgggcgtgtagggcagtggcaacgttcctttttgaaggatgtccatgcaact |
119 |
Q |
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| T |
3703602 |
gaggcacccgaatccaatatccaatctgagacccctggtggcatggcacgagcatgtagggcagtggcagtgttcctttttgaaggatgtccatgcaact |
3703701 |
T |
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| Q |
120 |
tgtaacaagttttagctgtatgattaggtctatcacaaaattggcaaattacccgctttgaagaggttggtgaagttgattgggaataagctggattcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || |
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| T |
3703702 |
tgtaacaagttttagctgtatgattaggtctatcacaaaattggcaaattacccgccttgaagaggttggtgaagttgattgagaataagctggattgaa |
3703801 |
T |
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| Q |
220 |
aacctgctttccagttttgttgtaaaactatttgcctctttgtgcagtatttgcagtagcaataa |
284 |
Q |
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|| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
3703802 |
aatctgctttccagttttgttgtaaaactgtttgcctctctgtgcagtatttgcagtagcaataa |
3703866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 20098551 - 20098815
Alignment:
| Q |
20 |
gaggcacccgagtccaatatccaatctgagacccctggtggcatggcacgggcgtgtagggcagtggcaacgttcctttttgaaggatgtccatgcaact |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20098551 |
gaggcacccgaatccaatatccaatctgagacccctggtggcatggcacgagcgtgtagggcagtggcagtgttcctttttgaaggatgtccatgcaact |
20098650 |
T |
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| Q |
120 |
tgtaacaagttttagctgtatgattaggtctatcacaaaattggcaaattacccgctttgaagaggttggtgaagttgattgggaataagctggattcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
20098651 |
tgtaacaagttttagctgtatgattaggtctatcacaaaattggcaaattacccactttgaagaggttggtgaagttgattgtgaataagctggattgaa |
20098750 |
T |
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| Q |
220 |
aacctgctttccagttttgttgtaaaactatttgcctctttgtgcagtatttgcagtagcaataa |
284 |
Q |
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|| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
20098751 |
aatctgctttccagttttgttgtaaaactgtttgcctctctatgcagtatttgcagtagcaataa |
20098815 |
T |
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