View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_187 (Length: 284)
Name: NF9985A_low_187
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_187 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 32528489 - 32528225
Alignment:
| Q |
20 |
gcaagcaaatctaaagtaactatgaatgagagtaatattcactcatttttcgccaaagttctcgctccactctccttattttgttcctagagttactctc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528489 |
gcaagcaaatctaaagtaactatgaatgagagtaatattcactcatttttcgccaaagttctcgctccactctccttattttgttcctagagttactctc |
32528390 |
T |
|
| Q |
120 |
atattaactttctttctgtcacactcaatcctaagatgtagttcaagtcttttgtgtagatcacatttctctctctaaatca-nnnnnnnagtactaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32528389 |
atattaactttctttctgtcacactcaatcctaagatgtagttcaagtcttttgtgtagatcacatttctctctctaaatcattttttttagtactaaaa |
32528290 |
T |
|
| Q |
219 |
gtagctaagagacagttttggtagtactagaaagtgtcatcttcggttgtttgtttcatctcatt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
32528289 |
gtagctaagagacagttttggtagtactagaaagtgtcatcttaggttgtttgtttcatttcatt |
32528225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University