View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_188 (Length: 283)

Name: NF9985A_low_188
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_188
NF9985A_low_188
[»] chr1 (9 HSPs)
chr1 (47-283)||(39135018-39135254)
chr1 (73-157)||(6221564-6221648)
chr1 (49-130)||(50146065-50146144)
chr1 (50-145)||(45758310-45758402)
chr1 (73-145)||(1633820-1633890)
chr1 (75-147)||(5128230-5128303)
chr1 (97-154)||(17322700-17322757)
chr1 (49-146)||(5533111-5533205)
chr1 (49-81)||(10926244-10926276)
[»] chr2 (16 HSPs)
chr2 (53-155)||(11952907-11953010)
chr2 (53-157)||(29694084-29694185)
chr2 (58-148)||(28425846-28425937)
chr2 (94-154)||(21666036-21666096)
chr2 (63-162)||(37182368-37182467)
chr2 (70-147)||(21190905-21190982)
chr2 (70-147)||(30175529-30175606)
chr2 (70-147)||(45156326-45156403)
chr2 (53-155)||(10252125-10252227)
chr2 (63-145)||(24035842-24035923)
chr2 (54-145)||(12134330-12134418)
chr2 (63-158)||(13800820-13800916)
chr2 (54-157)||(7742260-7742362)
chr2 (70-147)||(36949264-36949339)
chr2 (63-145)||(11913047-11913129)
chr2 (74-138)||(25192773-25192837)
[»] chr5 (18 HSPs)
chr5 (49-157)||(15639157-15639264)
chr5 (49-156)||(2024934-2025038)
chr5 (49-154)||(34425610-34425713)
chr5 (49-157)||(11242612-11242717)
chr5 (51-142)||(10543401-10543491)
chr5 (63-157)||(24395445-24395537)
chr5 (58-160)||(41911751-41911852)
chr5 (72-138)||(4931855-4931921)
chr5 (49-107)||(7078913-7078970)
chr5 (88-158)||(26719206-26719276)
chr5 (88-158)||(26988950-26989020)
chr5 (64-145)||(27528130-27528211)
chr5 (71-137)||(34855944-34856010)
chr5 (92-145)||(1366845-1366898)
chr5 (89-154)||(34307416-34307481)
chr5 (61-154)||(606036-606134)
chr5 (57-145)||(2531023-2531108)
chr5 (124-160)||(11245212-11245248)
[»] chr4 (16 HSPs)
chr4 (49-148)||(15734808-15734907)
chr4 (49-157)||(27111741-27111847)
chr4 (49-154)||(4168159-4168263)
chr4 (70-147)||(24404209-24404285)
chr4 (71-147)||(22315787-22315863)
chr4 (62-155)||(30507288-30507378)
chr4 (49-146)||(36363163-36363265)
chr4 (88-157)||(40216863-40216932)
chr4 (49-100)||(22077028-22077079)
chr4 (63-154)||(24613538-24613629)
chr4 (54-137)||(2135617-2135702)
chr4 (70-145)||(36178402-36178477)
chr4 (63-158)||(50677310-50677404)
chr4 (111-157)||(22076988-22077034)
chr4 (94-147)||(17353615-17353668)
chr4 (79-147)||(36441284-36441352)
[»] chr7 (13 HSPs)
chr7 (50-148)||(7398165-7398261)
chr7 (49-163)||(9021960-9022072)
chr7 (51-157)||(12419788-12419891)
chr7 (49-142)||(26917979-26918074)
chr7 (52-145)||(38971122-38971212)
chr7 (56-146)||(9014930-9015017)
chr7 (49-158)||(27237717-27237824)
chr7 (88-153)||(18200997-18201062)
chr7 (51-138)||(36903596-36903681)
chr7 (57-146)||(36891463-36891552)
chr7 (63-154)||(23020778-23020873)
chr7 (77-147)||(5955242-5955312)
chr7 (83-143)||(23744708-23744768)
[»] chr6 (6 HSPs)
chr6 (49-157)||(4036786-4036892)
chr6 (49-157)||(2477876-2477982)
chr6 (63-157)||(20611504-20611596)
chr6 (73-147)||(11081665-11081739)
chr6 (58-157)||(21183812-21183913)
chr6 (49-138)||(27131576-27131664)
[»] chr8 (15 HSPs)
chr8 (58-158)||(5721424-5721524)
chr8 (49-157)||(5973319-5973427)
chr8 (62-157)||(25561985-25562079)
chr8 (49-158)||(15078455-15078567)
chr8 (63-155)||(8645916-8646008)
chr8 (88-157)||(7944763-7944832)
chr8 (99-156)||(38009490-38009547)
chr8 (58-159)||(39332542-39332642)
chr8 (53-152)||(30674664-30674764)
chr8 (54-157)||(34813000-34813101)
chr8 (63-138)||(9107805-9107879)
chr8 (49-157)||(11289967-11290073)
chr8 (51-157)||(34049006-34049108)
chr8 (79-145)||(24534722-24534788)
chr8 (89-154)||(41677459-41677524)
[»] scaffold0097 (1 HSPs)
scaffold0097 (58-145)||(38806-38891)
[»] chr3 (11 HSPs)
chr3 (58-145)||(25855304-25855391)
chr3 (59-158)||(23641433-23641530)
chr3 (66-142)||(28689775-28689849)
chr3 (53-147)||(26279254-26279346)
chr3 (49-156)||(39718567-39718674)
chr3 (71-158)||(6937567-6937655)
chr3 (70-130)||(50483378-50483438)
chr3 (49-100)||(8420167-8420218)
chr3 (63-154)||(52973194-52973285)
chr3 (49-91)||(49392941-49392983)
chr3 (49-148)||(789734-789830)
[»] scaffold1320 (1 HSPs)
scaffold1320 (49-158)||(1051-1163)
[»] scaffold0022 (2 HSPs)
scaffold0022 (53-107)||(39914-39968)
scaffold0022 (53-107)||(137974-138028)
[»] scaffold1590 (1 HSPs)
scaffold1590 (81-145)||(425-488)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 39135018 - 39135254
Alignment:
Q  47 actggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39135018 actggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag 39135117  T
Q  147 gttcggccctgattattcatatatgcatttatttaaatgaataaaagaaaagtaataaaatgttgtactatctttcattatcttttagttgattaatctg 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39135118 gttcggccctgattattcatatatgcatttatttaaatgaataaaagaaaagtaataaaatgttgtactatctttcattatcttttagttgattaatctg 39135217  T
Q  247 aatagcttctctctcttgacttgaattctagttttga 283  Q
    |||||||||||||||||||||||||||||||||||||    
T  39135218 aatagcttctctctcttgacttgaattctagttttga 39135254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 6221648 - 6221564
Alignment:
Q  73 tgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||||||||||| |||||||||||||| |||||| ||| |||||||| |||||||  ||||||||||| ||||||| ||||||    
T  6221648 tgggctataattttttttttgaggcccatgccttggagagacccagttctattgagcgatttgcacaccctaaggttctgccctg 6221564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 50146144 - 50146065
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagct 130  Q
    ||||||||||||||||||||| |||||||||||||||  ||||| ||||  ||||||| | ||||||||  |||||||||||    
T  50146144 tggggtagtacttagtagtaccactgggctataattt--ttttttaggctgataccttagtgaggcccaactccattgagct 50146065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 45758402 - 45758310
Alignment:
Q  50 ggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||||||||||||||||||||| ||||||||   |||||||| ||||||||||  ||||| |||  |||||||||   |||||||| |||||    
T  45758402 ggggtagtacttagtagtactactggactataatt---tttttgagacccataccttaaggaggtccatctccattgagtggtttgcacatcccaa 45758310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 1633820 - 1633890
Alignment:
Q  73 tgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||||||||||||  |||  |||||||||||||| |||||||||||| |||||||   ||||||||||||||    
T  1633820 tgggctataatttttattt--aggcccataccttgaggaggcccagtttcattgagtgatttgcacaccccaa 1633890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 5128230 - 5128303
Alignment:
Q  75 ggctataattttgtttt-tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    ||||||| |||| |||| ||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||||||||    
T  5128230 ggctatattttttttttatgaggcccatatcttggagaggcccagctccattgagctgtttacaccccccaagg 5128303  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 17322700 - 17322757
Alignment:
Q  97 cccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||||| ||||| |||||    
T  17322700 cccataccttggggagaccccgttccattgagcggtttgcacaccctaaggtccggcc 17322757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 5533205 - 5533111
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag 146  Q
    |||||||||||||||||||| |||||| ||||||||   ||||| || |||||| ||| ||| || |||| || |||||||  |||| ||||||||||    
T  5533205 tggggtagtacttagtagtagtactggactataatt---ttttttagacccatatcttagggtggtccagctcaattgagcgatttgaacaccccaag 5533111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 10926244 - 10926276
Alignment:
Q  49 tggggtagtacttagtagtactactgggctata 81  Q
    |||||||||||||||||||| ||||||||||||    
T  10926244 tggggtagtacttagtagtaatactgggctata 10926276  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 11952907 - 11953010
Alignment:
Q  53 gtagtacttagtagtactactgggctataa-ttttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcg 151  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11952907 gtagtacttagtagtactacagggctataaattttatttttgaggctcataccttggggaggcccagttccattgagctccttgcacaccccaaggttcg 11953006  T
Q  152 gccc 155  Q
    ||||    
T  11953007 gccc 11953010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 29694185 - 29694084
Alignment:
Q  53 gtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcgg 152  Q
    ||||||||||||||||||| |||||||||||||| |||   || ||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||    
T  29694185 gtagtacttagtagtactagtgggctataatttttttt---agacccataccttaaggaggcccagctccattgagctctttgcacaccccaaggtgcgg 29694089  T
Q  153 ccctg 157  Q
    |||||    
T  29694088 ccctg 29694084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 28425846 - 28425937
Alignment:
Q  58 acttagtagtactactgggctataattttgtttt-tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| || ||||||||||||||   |||||||||||||||||    
T  28425846 acttagtagtactactggactataatttttttttttgaggcccataccttggggtggtccagttccattgagtggtttgcacaccccaaggt 28425937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 21666036 - 21666096
Alignment:
Q  94 aggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  21666036 aggcccataccttggggaggcccagttccattgagctccttgcacaccccaaggtccggcc 21666096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 37182467 - 37182368
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctgattat 162  Q
    ||||||| |||| ||||||||||  ||||||| || | ||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||| ||||    
T  37182467 gtagtaccactgagctataatttcctttttgacgctcttaccttggggaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttat 37182368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 21190905 - 21190982
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  21190905 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 21190982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 30175606 - 30175529
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  30175606 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 30175529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 45156326 - 45156403
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  45156326 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 45156403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 10252227 - 10252125
Alignment:
Q  53 gtagtacttagtagtactactgggctataattttgtttttgaggcccataccttgggg-aggcccagttccattgagctctttgcacaccccaaggttcg 151  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||| ||| |||  | | ||||||||||||||||||||||| | ||    
T  10252227 gtagtacttagtagtactactaggctataatttt-tattttaggcccataccttggggaaggtccaactacgttgagctctttgcacaccccaagatccg 10252129  T
Q  152 gccc 155  Q
    ||||    
T  10252128 gccc 10252125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 24035842 - 24035923
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||||||| |||||||||||||  ||||| |||| || ||||||||||||||| |||||||||||||| |||||||||||||    
T  24035842 gtagtactattgggctataatttatttttt-aggctcacaccttggggaggcccggttccattgagctccttgcacaccccaa 24035923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 12134330 - 12134418
Alignment:
Q  54 tagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||||||||||||| |||||||||||||  ||||||||| ||||||||||  ||||||| |||||||||| ||  |||||||||||||    
T  12134330 tagtacttagtagtactattgggctataattt--tttttgagg-ccataccttgaagaggcccggttccattgaccttcttgcacaccccaa 12134418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 13800820 - 13800916
Alignment:
Q  63 gtagtactactgggctata-attttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctga 158  Q
    ||||||||||||||||||| || || |||||||||| ||||||||||  || ||||  ||||||||||| ||||||||||||||||| || ||||||    
T  13800820 gtagtactactgggctatatatattttttttgaggctcataccttggaaagacccaactccattgagctttttgcacaccccaaggtccgaccctga 13800916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 7742260 - 7742362
Alignment:
Q  54 tagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggc 153  Q
    |||||||||||||||||||| | |||||||||| ||||| | || ||||||||||| |||||| |||| |||||||  ||||||||| ||||||| || |    
T  7742260 tagtacttagtagtactactagactataatttt-ttttttaagctcataccttgggaaggcccggttctattgagcggtttgcacactccaaggtccgac 7742358  T
Q  154 cctg 157  Q
    ||||    
T  7742359 cctg 7742362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 36949264 - 36949339
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    ||||||||||||||||| ||||  |||||| ||||||||| |||||||| ||||||||||| ||||||| ||||||||    
T  36949264 tactgggctataattttttttt--aggcccgtaccttgggaaggcccagctccattgagctgtttgcaccccccaagg 36949339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 11913047 - 11913129
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||||||| |||||||| || ||||||| |  |||||||| | ||||||||  |||||||| |||||||||||||||||    
T  11913047 gtagtactactgtgctataatattttttttgaagttcataccttagagaggcccaactccattgaactctttgcacaccccaa 11913129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 25192837 - 25192773
Alignment:
Q  74 gggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcac 138  Q
    ||||||||| ||| ||| |||| |||||||||| |||||||| || ||||||||||| |||||||    
T  25192837 gggctataaatttttttatgagacccataccttagggaggcctagctccattgagctatttgcac 25192773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 15639264 - 15639157
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||    
T  15639264 tggggtagtacttagtagtactactggactataatttttttttt-aggcccataccttggggagctccagttccattgagctccttgcacacctcaaggt 15639166  T
Q  149 tcggccctg 157  Q
     ||||||||    
T  15639165 acggccctg 15639157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 2024934 - 2025038
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    ||||||||||||||||||||||||||||||||||||   ||||| || |||||||||||||||||| |||||| ||||||||| ||||||| || || ||    
T  2024934 tggggtagtacttagtagtactactgggctataatt---ttttttagacccataccttggggaggcgcagttctattgagctccttgcacatcctaaagt 2025030  T
Q  149 tcggccct 156  Q
    ||||||||    
T  2025031 tcggccct 2025038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 34425713 - 34425610
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||  | ||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  34425713 tggggtagtacttagtaatactactgggctataaattt-tttttgaaactcataccttgggaagacccagttcaattgagctctttgcaca-cccaaggt 34425616  T
Q  149 tcggcc 154  Q
    ||||||    
T  34425615 tcggcc 34425610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 11242612 - 11242717
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    ||||||||||||||| |||||||||||| |||| |||| |||   ||||||||||||||| |||||| ||||||||||| ||| ||||||||| ||||||    
T  11242612 tggggtagtacttagcagtactactgggttatattttttttt---aggcccataccttggagaggccaagttccattgaactccttgcacacctcaaggt 11242708  T
Q  149 tcggccctg 157  Q
     ||||||||    
T  11242709 ccggccctg 11242717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 10543491 - 10543401
Alignment:
Q  51 gggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccc 142  Q
    |||||||| |||||||||||||| |||||||| ||| ||||||| || ||||||||| ||||||||  ||| ||||||||| ||||||||||    
T  10543491 gggtagtatttagtagtactactaggctataa-tttatttttgaagctcataccttgaggaggcccgattctattgagctccttgcacaccc 10543401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 24395537 - 24395445
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||||||| |  |||||| ||| |||||||| ||||||||||||||||||| || ||||||||||||||||||| ||| ||||| ||||||||    
T  24395537 gtagtactaccgaactataaattt-tttttgag-cccataccttggggaggcctagctccattgagctctttgcacgccctaaggtccggccctg 24395445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 41911751 - 41911852
Alignment:
Q  58 acttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||| ||||||| ||| |||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||  |||||||| ||||| || ||| ||||    
T  41911751 acttagcagtactattggactataatttt-tttatgaggcccatgccttggggaggtccagttccaatgagcggtttgcacatcccaaagtccggacctg 41911849  T
Q  158 att 160  Q
    |||    
T  41911850 att 41911852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 4931855 - 4931921
Alignment:
Q  72 ctgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcac 138  Q
    |||| |||||||||| ||| |||||| ||||||||||||||| |||| ||||||||||| |||||||    
T  4931855 ctggactataattttttttatgaggcgcataccttggggaggtccagctccattgagctatttgcac 4931921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 7078970 - 7078913
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttg 107  Q
    ||||||||||||||||||||||| |  ||||||||||| ||||||||||||||||||||    
T  7078970 tggggtagtacttagtagtactattatgctataatttt-tttttgaggcccataccttg 7078913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 26719206 - 26719276
Alignment:
Q  88 tttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctga 158  Q
    |||||||||||||| ||||||||| |||| ||||| |||||||| || |||| |||||||| |||||||||    
T  26719206 tttttgaggcccattccttggggaagcccggttcctttgagctccttacacatcccaaggtccggccctga 26719276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 26988950 - 26989020
Alignment:
Q  88 tttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctga 158  Q
    |||||||||||||| ||||||||| |||| ||||| |||||||| || |||| |||||||| |||||||||    
T  26988950 tttttgaggcccattccttggggaagcccggttcctttgagctccttacacatcccaaggtccggccctga 26989020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 27528211 - 27528130
Alignment:
Q  64 tagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||| |||||||||||||| ||||||| || ||||||||| |||| ||||  ||||||||| | ||||||||| ||||    
T  27528211 tagtactagtgggctataattttttttttgaagctcataccttgaggagacccaactccattgagttgtttgcacactccaa 27528130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 34856010 - 34855944
Alignment:
Q  71 actgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgca 137  Q
    |||||||||||| ||| | | ||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  34856010 actgggctataaatttttatatgaggcccataccttagggaggcccagctccatttagctgtttgca 34855944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 1366845 - 1366898
Alignment:
Q  92 tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||| |||||| ||||| ||||||||| ||||||||||||||||| ||||||||    
T  1366845 tgagacccatatcttggagaggcccagctccattgagctctttgctcaccccaa 1366898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 34307416 - 34307481
Alignment:
Q  89 ttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    ||||||||||||||||| | ||||| || |||||||||||||  |||| ||||||||||| |||||    
T  34307416 ttttgaggcccatacctcgaggaggtccggttccattgagcttcttgcgcaccccaaggtccggcc 34307481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 606134 - 606036
Alignment:
Q  61 tagtagtactactgggctataattttgttttt-----gaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    ||||||||||||||| |||||||||| |||||     ||| || |||||||| |||||| |   |||||||||||||||||||| |  |||||||||||    
T  606134 tagtagtactactggactataattttttttttcttctgagacctataccttgaggaggctctactccattgagctctttgcacatctgaaggttcggcc 606036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 2531023 - 2531108
Alignment:
Q  57 tacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||||||||||||||||  ||||||||   ||||| |||| ||||||||| |||| || || |||||| |||  ||||||||||||||    
T  2531023 tacttagtagtactactgaactataatt---ttttttaggcacataccttgaggagtcctagctccattaagcggtttgcacaccccaa 2531108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 11245248 - 11245212
Alignment:
Q  124 ttgagctctttgcacaccccaaggttcggccctgatt 160  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  11245248 ttgagctctttgcactccccaaggtccggccctgatt 11245212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 15734907 - 15734808
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||    
T  15734907 tggggtagtacttagtagtactacttggttataattttttttttgaggcccataccttggggaggtccggttccattcagctccttgcacatcccaaggt 15734808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 27111847 - 27111741
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||||||||||||||||||||||| ||  ||||| || ||||| |||||||||||||| ||| |||||||||| ||||||||| ||||||    
T  27111847 tggggtagtacttagtagtactactgggctataactt--ttttttagacccatgccttggggaggcccggttgcattgagctccttgcacacctcaaggt 27111750  T
Q  149 tcggccctg 157  Q
     || |||||    
T  27111749 ccgcccctg 27111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 4168159 - 4168263
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||  ||| |||  || |||||| ||| |||||||||| |||||    
T  4168159 tggggtagtacttagtagtactgctgggatataatttt-ttttttaggcccataccttgaagagacccgatttcattgaactccttgcacaccctaaggt 4168257  T
Q  149 tcggcc 154  Q
    ||||||    
T  4168258 tcggcc 4168263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 24404285 - 24404209
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  24404285 tactaggctataaatttttttatgaggcccataccttggggaggcccagctccattgagctgtttgcac-ccccaagg 24404209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 22315787 - 22315863
Alignment:
Q  71 actgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||||||||||||||| ||| |||||| ||||||||||||||| |||| ||||||||||| ||||||| ||| ||||    
T  22315787 actgggctataattttttttatgaggctcataccttggggaggtccagctccattgagctgtttgcaccccctaagg 22315863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 30507288 - 30507378
Alignment:
Q  62 agtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccc 155  Q
    ||||||||||||| ||||||||||| |||   ||| |||| ||||||||||||||| ||||||||||   ||||||||||||||||| ||||||    
T  30507288 agtagtactactgcgctataatttttttt---aggtccattccttggggaggcccaattccattgagtggtttgcacaccccaaggtccggccc 30507378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 36363163 - 36363265
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttt-----tgaggcccataccttggggaggcccagttccattgagctctttgcacacccc 143  Q
    ||||||||||||||||||||||||||  |||||||||| ||||     ||||  ||||||||||| ||||| ||| ||||||||||||||||  ||||||    
T  36363163 tggggtagtacttagtagtactactgaactataatttttttttttgcctgagatccataccttggagaggctcagctccattgagctctttgtccacccc 36363262  T
Q  144 aag 146  Q
    |||    
T  36363263 aag 36363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 40216932 - 40216863
Alignment:
Q  88 tttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||||| |||||| |||| ||||||||  ||||||||| ||||||||||||||||| || ||||||||    
T  40216932 tttttgagacccatatcttgaggaggcccgattccattgatctctttgcacaccccaatgtccggccctg 40216863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 22077079 - 22077028
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggccca 100  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||| |||||||    
T  22077079 tggggtagtatttagtagcactactgggctataatttttttttttaggccca 22077028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 24613629 - 24613538
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    ||||||||||| |||| ||||||| ||||||||||  |||| |||| |||  ||||||||||||||| |||| |||| || ||||| |||||    
T  24613629 gtagtactactaggctctaattttatttttgaggctaatactttggagagttccagttccattgagcactttacacatcctaaggtccggcc 24613538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 2135617 - 2135702
Alignment:
Q  54 tagtacttagtagtactactgggctataa--ttttgtttttgaggcccataccttggggaggcccagttccattgagctctttgca 137  Q
    |||||||||||||||||||||| ||||||  |||| ||||| || |||||||||| || || ||||| |||||||| ||| |||||    
T  2135617 tagtacttagtagtactactggactataattttttttttttaagacccataccttaggaagacccagctccattgaactccttgca 2135702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 36178477 - 36178402
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||| ||||||||||| ||| |||||||| ||||| ||| || ||| |||||||||||||| || |||| |||||    
T  36178477 tactgtgctataattttttttctgaggcccgtacctggggaagacccggttccattgagctccttacacatcccaa 36178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 50677310 - 50677404
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctga 158  Q
    ||||||| || || |||||||||| |||| ||||| ||||| ||||| |||||||  ||||||||||||||| |||| |||||  | |||||||||    
T  50677310 gtagtaccacaggactataatttt-ttttcgaggcacatactttgggaaggcccaactccattgagctctttacacatcccaaaatccggccctga 50677404  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 22077034 - 22076988
Alignment:
Q  111 aggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||||| ||||||||||  ||||||||||||||||| ||||||||    
T  22077034 aggcccagctccattgagcggtttgcacaccccaaggtccggccctg 22076988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 17353668 - 17353615
Alignment:
Q  94 aggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||| ||||| |||||||||| ||| ||||||||||| ||||||| ||||||||    
T  17353668 aggctcatacattggggaggctcagctccattgagctgtttgcaccccccaagg 17353615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 36441284 - 36441352
Alignment:
Q  79 ataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||||||| || |||||||||||  ||| ||||| ||||| ||  ||||||||||||||| ||||||||    
T  36441284 ataatttttttcttgaggcccatcactttgggagacccagctcggttgagctctttgcactccccaagg 36441352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 7398261 - 7398165
Alignment:
Q  50 ggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    ||||||||||||||||||||||||||||||||| |||  |||  ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  7398261 ggggtagtacttagtagtactactgggctataaattttattt--aggcccataccttggggaggctcagctccattgagctcgttgcacaccccaaggt 7398165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 9021960 - 9022072
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || |||||| || |||||||||||| |||| |||||| |||| | ||||||||||    
T  9021960 tggggtagtacttagtagtactactgggctataattt--ttttttagacccataactgggggaggcccagctccactgagctgtttgtaaaccccaaggt 9022057  T
Q  149 tcggccctgattatt 163  Q
    |||||||| ||||||    
T  9022058 tcggccctaattatt 9022072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 12419788 - 12419891
Alignment:
Q  51 gggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttc 150  Q
    |||||||||||||||||| ||| || ||||| |||| |||   ||||||||||||||| ||||||| |||||||||| ||| ||||| |||||||||| |    
T  12419788 gggtagtacttagtagtattaccggcctatattttttttt---aggcccataccttggtgaggcccggttccattgaactccttgcagaccccaaggtcc 12419884  T
Q  151 ggccctg 157  Q
    |||||||    
T  12419885 ggccctg 12419891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 26917979 - 26918074
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataa--ttttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccc 142  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||| || | |||||||| | || |||||| |||||||||||||||||||||||    
T  26917979 tggggtagtacttagtagtactactgagctataatttttttttttttagactcataccttagagatgcccagctccattgagctctttgcacaccc 26918074  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 38971212 - 38971122
Alignment:
Q  52 ggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||||||||||||||| |||||||||||| |||| |||   ||||| |||| |||||||| ||||||||||||||||  ||||||||||||||    
T  38971212 ggtagtacttagtagtattactgggctatattttttttt---aggccaatactttggggagacccagttccattgagcggtttgcacaccccaa 38971122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 9014930 - 9015017
Alignment:
Q  56 gtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag 146  Q
    |||||||||||||||| |||||||||||||| |||   |||| ||||||||| |||||||||  ||||||||| | |||||||||||||||    
T  9014930 gtacttagtagtactattgggctataatttttttt---aggctcataccttgcggaggcccaactccattgagttgtttgcacaccccaag 9015017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 27237717 - 27237824
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||| |||| ||| || | |||| |||| |||| ||  |||||||||  ||||||||||  |||||||||||||||||||||||||| ||    
T  27237717 tggggtagtacttattagtgctattgagttatagtttttttttaga--cccatacctcagggaggcccaactccattgagctctttgcacaccccaaagt 27237814  T
Q  149 tcggccctga 158  Q
     |||||||||    
T  27237815 ccggccctga 27237824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 18201062 - 18200997
Alignment:
Q  88 tttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggc 153  Q
    |||||||  |||||||||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  18201062 tttttgatacccataccttggggaggcccggttccattgagcggtttgcaaaccccaaggttcggc 18200997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 36903596 - 36903681
Alignment:
Q  51 gggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcac 138  Q
    ||||||||||||||||||||||||| |||||||||  |||| ||  |  ||||||||| ||||||||| || ||||||||||||||||    
T  36903596 gggtagtacttagtagtactactggactataatttatttttaga--cttataccttggagaggcccagctcaattgagctctttgcac 36903681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 36891552 - 36891463
Alignment:
Q  57 tacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag 146  Q
    ||||||||||||||||| | |||||||||| ||||| ||  ||||| ||||| ||||||| |||||||| |||  |||||||| ||||||    
T  36891552 tacttagtagtactactagactataatttttttttttagatccatatcttggagaggcccggttccattcagcgatttgcacaacccaag 36891463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 23020778 - 23020873
Alignment:
Q  63 gtagtactactgggctataattttgtttt----tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    |||||||||||||||||||||||| ||||    |||| | |||||||||||||| |||   ||||||||||| ||||||||||  ||||| |||||    
T  23020778 gtagtactactgggctataatttttttttcttctgagactcataccttggggagacccgtctccattgagctatttgcacacctaaaggtccggcc 23020873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 5955312 - 5955242
Alignment:
Q  77 ctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||||||||  ||||| || ||||||||||| |||||||||| ||||||| |||| |||| | ||||||||    
T  5955312 ctataatttctttttttagtcccataccttgaggaggcccagctccattgtgctccttgctccccccaagg 5955242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 23744768 - 23744708
Alignment:
Q  83 ttttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacacccc 143  Q
    |||| ||||| ||||||||| |||||||||| | |||||||||||||  ||||||| ||||    
T  23744768 tttttttttttaggcccataacttggggaggtctagttccattgagcggtttgcacccccc 23744708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 4036892 - 4036786
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||  ||||||||||  |||||||||||||||||    
T  4036892 tgggatagtacttagtagtactactgggctataatttt--ttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaaggt 4036795  T
Q  149 tcggccctg 157  Q
     || |||||    
T  4036794 ccgaccctg 4036786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 2477876 - 2477982
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||||||||||||||||||||||| ||  ||||| || ||||| |||||||||||||| ||| |||||||||| ||||||||| ||||||    
T  2477876 tggggtagtacttagtagtactactgggctataactt--ttttttagacccatgccttggggaggcccggttgcattgagctccttgcacacctcaaggt 2477973  T
Q  149 tcggccctg 157  Q
     || |||||    
T  2477974 ccgcccctg 2477982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 20611596 - 20611504
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||||||||| |||||| |||| |||| ||  |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  20611596 gtagtactactgagctatattttttttttaga--cccataccttagggaggcccagctccattgagctctttgcacaccccaaggtccgaccctg 20611504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 11081665 - 11081739
Alignment:
Q  73 tgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||||||||| ||| | | |||||||||| |||| |||||||| || ||||||||||| ||||||| ||| ||||    
T  11081665 tgggctataaatttttatatgaggcccatgccttagggaggcctagctccattgagctgtttgcaccccctaagg 11081739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 21183812 - 21183913
Alignment:
Q  58 acttagtagtactactgggctataattttgtttttgaggcccata--ccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccc 155  Q
    |||||||||||  ||| | |||||  ||| |||||||||||||||  |||||||| |||| || | ||||||||  |||||||||||||| || ||||||    
T  21183812 acttagtagtatcactagactatacatttttttttgaggcccatataccttggggtggccaagcttcattgagcggtttgcacaccccaaagtccggccc 21183911  T
Q  156 tg 157  Q
    ||    
T  21183912 tg 21183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 27131576 - 27131664
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcac 138  Q
    ||||||||||||||  ||||||||||  |||||| ||| || | ||| |||||||||||  ||||| ||| ||||||||||| |||||||    
T  27131576 tggggtagtacttaacagtactactgaactataaatttattat-gagacccataccttgaagaggctcagctccattgagctttttgcac 27131664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 5721524 - 5721424
Alignment:
Q  58 acttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||| |||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |  ||||||||    
T  5721524 acttagcagtagtattgggctataattttttttttgaggcccatgccttggggaggcccagttccattgagcggtttgcacaccccaaagcccggccctg 5721425  T
Q  158 a 158  Q
    |    
T  5721424 a 5721424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 5973319 - 5973427
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||||||||||| || |||||||| |||||||||||  |||| || |||||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  5973319 tggggtagtacttaataatactactgagctataatttttattttaagacccataccttggggaggcccagctccattgagcggtttgcagaccccaaggt 5973418  T
Q  149 tcggccctg 157  Q
      |||||||    
T  5973419 ctggccctg 5973427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 25561985 - 25562079
Alignment:
Q  62 agtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    |||||||||| |||||||||| || |||||| |||||||||| |||||||||||   ||||||||||||| |||||||||||||||| ||||||||    
T  25561985 agtagtactattgggctataaatt-gttttttaggcccatactttggggaggcctgattccattgagctccttgcacaccccaaggtccggccctg 25562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 15078567 - 15078455
Alignment:
Q  49 tggggtagtacttagtagtactactgggctata--attttgtttt-tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||||||||||||||||||| |||| ||||||  ||||| |||| |||||||||||| ||| ||||| |||  |||||||||||||||||  |||||||    
T  15078567 tggggtagtacttagtagtaccactgagctatacaatttttttttctgaggcccatactttgaggaggtccaactccattgagctctttgcgtaccccaa 15078468  T
Q  146 ggttcggccctga 158  Q
    ||| || ||||||    
T  15078467 ggtccgaccctga 15078455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 8646008 - 8645916
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccc 155  Q
    |||||||||||| | ||||||||| ||||| | || ||||| ||| |||||| |||||||||||||||| ||||||||| |||||| ||||||    
T  8646008 gtagtactactgagttataattttttttttaaagctcatactttgaggaggctcagttccattgagctccttgcacaccacaaggtccggccc 8645916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 7944763 - 7944832
Alignment:
Q  88 tttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    ||||| |||||||||||||||||| ||||||||||||||| |  ||||||||||||||||| || |||||    
T  7944763 ttttttaggcccataccttggggaagcccagttccattgaacggtttgcacaccccaaggtccgaccctg 7944832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 38009490 - 38009547
Alignment:
Q  99 cataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccct 156  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||||    
T  38009490 cataccttggggaggctcagctccattgagctctttacacaccccaaggtccggccct 38009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 39332542 - 39332642
Alignment:
Q  58 acttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 157  Q
    ||||| |||||||| ||| |||||||| | ||| |||||||||| ||||||||| | |||||||||||||||  |||||||| |||||||| || |||||    
T  39332542 acttaatagtactattggactataattct-tttatgaggcccatgccttggggatgtccagttccattgagcggtttgcacatcccaaggtccgaccctg 39332640  T
Q  158 at 159  Q
    ||    
T  39332641 at 39332642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 30674664 - 30674764
Alignment:
Q  53 gtagtacttagtagtactactgggctataattt-tgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcg 151  Q
    ||||| ||||||| ||||||||| ||||||| | | ||||| |||| |||| ||||| ||| ||||||||||||||||| |||| |||||||||| ||||    
T  30674664 gtagtgcttagtactactactggactataatatattttttttaggctcatatcttggagagacccagttccattgagctttttgtacaccccaagattcg 30674763  T
Q  152 g 152  Q
    |    
T  30674764 g 30674764  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 34813000 - 34813101
Alignment:
Q  54 tagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggc 153  Q
    |||||||||||||||||||| | |||||||||| |||||||||     ||||||||||| ||||||||||| ||||  |||||| |||| ||||| ||||    
T  34813000 tagtacttagtagtactacttgactataattttttttttgagg--tgaaccttggggagacccagttccatagagcggtttgcataccctaaggtccggc 34813097  T
Q  154 cctg 157  Q
    ||||    
T  34813098 cctg 34813101  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 9107879 - 9107805
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcac 138  Q
    |||||||||||||||||||  | | ||||| ||||||||||||||||||||||||  ||||||||||| |||||||    
T  9107879 gtagtactactgggctatatatattttttt-aggcccataccttggggaggcccaactccattgagctgtttgcac 9107805  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 11290073 - 11289967
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||| |||||||||||||||||||| | |||||||||  ||||| ||| |||||||||  |||  ||||  ||||||||    |||||||||||||||||    
T  11290073 tgggatagtacttagtagtactactcgactataattt--ttttttaggtccataccttaaggatacccaactccattgaatagtttgcacaccccaaggt 11289976  T
Q  149 tcggccctg 157  Q
     ||||||||    
T  11289975 ccggccctg 11289967  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 34049006 - 34049108
Alignment:
Q  51 gggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttc 150  Q
    ||||||||||||||||| |||||||||||||||||| ||    | || |||||| | ||||| | ||||| |||| || || |||||||||||||||| |    
T  34049006 gggtagtacttagtagttctactgggctataattttttt----aagctcataccatagggagacacagtttcattaagttccttgcacaccccaaggtcc 34049101  T
Q  151 ggccctg 157  Q
    || ||||    
T  34049102 ggtcctg 34049108  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 24534788 - 24534722
Alignment:
Q  79 ataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||| || |||||||||||  ||| ||||||||||| || ||||||||| |||||| ||||||    
T  24534788 ataatttttttcttgaggcccatcactttgggaggcccagctcgattgagctcgttgcactccccaa 24534722  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 41677459 - 41677524
Alignment:
Q  89 ttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    ||||||||| | |||||| ||||| || ||||||||||| || |||||||||| |||| |||||||    
T  41677459 ttttgaggctcgtaccttagggagacctagttccattgaactatttgcacacctcaagattcggcc 41677524  T

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Target: scaffold0097 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 38891 - 38806
Alignment:
Q  58 acttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||| || |||||||||||||| ||| |||||||||||||    
T  38891 acttagtagtactactggactataatttt--ttttgaggcccataccttgggaagacccagttccattgaactccttgcacaccccaa 38806  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 25855391 - 25855304
Alignment:
Q  58 acttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||||||||||| || ||||||| | | |||||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  25855391 acttagtagtactattgtgctataaatctttttttgaggcccataccttggggaggcccagttctattgggcggtttgcacaccccaa 25855304  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 23641433 - 23641530
Alignment:
Q  59 cttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctga 158  Q
    |||||||||  |||| | ||||||||||  |||||||||||||||||||||||||||| ||||||||||||  |||||||||||||| || |||| ||||    
T  23641433 cttagtagttttactagactataatttt--ttttgaggcccataccttggggaggcccggttccattgagcggtttgcacaccccaaagtccggcactga 23641530  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 28689775 - 28689849
Alignment:
Q  66 gtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccc 142  Q
    ||||||||||||||||||||| ||||  ||| |||||||||||||| | || |||||||||||||||||||||||||    
T  28689775 gtactactgggctataattttttttt--aggtccataccttggggatgtccggttccattgagctctttgcacaccc 28689849  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 26279346 - 26279254
Alignment:
Q  53 gtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaagg 147  Q
    |||||| ||||||||||||||| ||||||||||| |||| ||  | |||||| ||||||||||||| |||| ||||||| |||||||||| ||||    
T  26279346 gtagtatttagtagtactactgagctataatttttttttaga--ctcataccctggggaggcccagctccagtgagctccttgcacaccctaagg 26279254  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 39718674 - 39718567
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||||| ||||||| |||||||| || ||||||||||| ||| | | ||||||||  | |||||| || | |||||||||||||||| ||||||||| ||    
T  39718674 tggggttgtacttaatagtactattgagctataattttttttctaaagcccatactatagggaggtccggctccattgagctctttgaacaccccaaagt 39718575  T
Q  149 tcggccct 156  Q
    ||||||||    
T  39718574 tcggccct 39718567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 6937567 - 6937655
Alignment:
Q  71 actgggctataattttgtttt-tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctga 158  Q
    |||||||||||||||| |||| |||| ||||||| ||||| |||||||| ||||||||||| ||||||| |||||| | |||| |||||    
T  6937567 actgggctataatttttttttatgagacccatacattgggaaggcccagctccattgagctatttgcaccccccaaaggtcgggcctga 6937655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 50483378 - 50483438
Alignment:
Q  70 tactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagct 130  Q
    ||||||||||||| ||| | | ||||||||||||||| ||||||||||| |||||||||||    
T  50483378 tactgggctataaatttttatatgaggcccataccttagggaggcccagctccattgagct 50483438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 8420218 - 8420167
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggccca 100  Q
    ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||    
T  8420218 tggggtagtacttagtagtcctattgggctataatttttttttggaggccca 8420167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 52973285 - 52973194
Alignment:
Q  63 gtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 154  Q
    ||||||||||||||| ||||   | |||||||  ||||||||||||| |||| ||||||||||||||  |||| |||||| ||||| |||||    
T  52973285 gtagtactactgggccataaaactatttttgaaacccataccttgggaaggctcagttccattgagcagtttgtacacccgaaggtccggcc 52973194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 49392983 - 49392941
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttt 91  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  49392983 tggggcagtacttagtagtactactgggctataattttttttt 49392941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 789830 - 789734
Alignment:
Q  49 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggt 148  Q
    |||| |||||||||||||||| ||||  ||||||||||   || ||||| |||| | ||||||||||||  ||||||||||  ||||||||||| |||||    
T  789830 tgggatagtacttagtagtacgactgacctataatttt---ttcgaggctcatatcatggggaggcccaactccattgagcagtttgcacaccctaaggt 789734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 1163 - 1051
Alignment:
Q  49 tggggtagtacttagtagtactactgggctata--attttgtttt-tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    ||||||||||||||||||||| |||| ||||||  ||||| |||| |||||||||||| ||| ||||| |||  |||||||||||||||||  |||||||    
T  1163 tggggtagtacttagtagtaccactgagctatacaatttttttttctgaggcccatactttgaggaggtccaactccattgagctctttgcgtaccccaa 1064  T
Q  146 ggttcggccctga 158  Q
    ||| || ||||||    
T  1063 ggtccgaccctga 1051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 39968 - 39914
Alignment:
Q  53 gtagtacttagtagtactactgggctataattttgtttttgaggcccataccttg 107  Q
    ||||||||||||||||||| | | |||||||||| ||||||||| ||||||||||    
T  39968 gtagtacttagtagtactaatagactataattttttttttgaggtccataccttg 39914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 138028 - 137974
Alignment:
Q  53 gtagtacttagtagtactactgggctataattttgtttttgaggcccataccttg 107  Q
    ||||||||||||||||||| | | |||||||||| ||||||||| ||||||||||    
T  138028 gtagtacttagtagtactaatagactataattttttttttgaggtccataccttg 137974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 425 - 488
Alignment:
Q  81 aattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 145  Q
    |||||| ||||||||| |||||||||||  ||| ||||||| ||||| ||| |||||||||||||    
T  425 aattttctttttgaggtccataccttggcaagg-ccagttctattgaactccttgcacaccccaa 488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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