View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_191 (Length: 281)

Name: NF9985A_low_191
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_191
NF9985A_low_191
[»] chr6 (26 HSPs)
chr6 (10-275)||(5688749-5689020)
chr6 (10-275)||(5177917-5178177)
chr6 (10-275)||(5279742-5280008)
chr6 (25-135)||(5242504-5242614)
chr6 (10-159)||(5126597-5126746)
chr6 (10-237)||(5065338-5065566)
chr6 (26-135)||(5427094-5427203)
chr6 (10-130)||(5346207-5346327)
chr6 (12-127)||(5398226-5398341)
chr6 (10-128)||(5180773-5180891)
chr6 (29-133)||(5100812-5100916)
chr6 (29-133)||(5135913-5136017)
chr6 (10-133)||(5156007-5156130)
chr6 (10-133)||(5372275-5372398)
chr6 (10-144)||(5098389-5098523)
chr6 (30-131)||(23127306-23127407)
chr6 (10-133)||(5351578-5351701)
chr6 (10-135)||(5352855-5352980)
chr6 (11-133)||(2939094-2939216)
chr6 (10-135)||(5072674-5072799)
chr6 (23-128)||(5283223-5283328)
chr6 (10-102)||(5334363-5334455)
chr6 (34-128)||(5439213-5439307)
chr6 (17-118)||(5253718-5253819)
chr6 (17-109)||(5124461-5124553)
chr6 (23-128)||(5256113-5256218)
[»] chr4 (5 HSPs)
chr4 (24-156)||(4122615-4122747)
chr4 (28-206)||(25569036-25569217)
chr4 (23-168)||(4132577-4132719)
chr4 (23-133)||(4319296-4319406)
chr4 (89-135)||(7884147-7884193)
[»] chr3 (4 HSPs)
chr3 (9-127)||(47985393-47985511)
chr3 (9-127)||(48003967-48004085)
chr3 (9-127)||(47994680-47994798)
chr3 (9-127)||(48013252-48013370)
[»] chr7 (1 HSPs)
chr7 (10-135)||(36212913-36213038)
[»] scaffold0294 (1 HSPs)
scaffold0294 (30-117)||(7887-7974)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 5689020 - 5688749
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5689020 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaaca 5688921  T
Q  110 gtttatctcgtaaatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaat 206  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  5688920 gtttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaat 5688821  T
Q  207 gctattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 275  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  5688820 gctattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga 5688749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 5177917 - 5178177
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5177917 agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca 5178016  T
Q  110 gtttatctcgtaaatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 209  Q
    |||||||||||| |||||||||||||  | ||||| ||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||    
T  5178017 gtttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgct 5178110  T
Q  210 at-taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga 275  Q
     | | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5178111 ttgtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga 5178177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 5279742 - 5280008
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5279742 agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca 5279841  T
Q  110 gtttatctcgtaaatgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 206  Q
    |||||||||||| |||||||||||||  | ||||| |||||||||   || |||||||||||||||      ||||||||||||||||||||||||||||    
T  5279842 gtttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaat 5279935  T
Q  207 gctat-taagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 275  Q
    ||| | | ||||| |||||||||||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  5279936 gctttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga 5280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  25 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaat 124  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||| ||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  125 gatgaaccaat 135  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 5126746 - 5126597
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| |||||  ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| |     
T  5126746 agatgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagct 5126647  T
Q  110 gtttatctcgtaaatgatgaaccaatccgtgaaaatatggagcaatgtca 159  Q
    ||||||||| || |||||||||||||  |||||| |||| ||||||||||    
T  5126646 gtttatctcatatatgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 5065566 - 5065338
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| ||||| |||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||    
T  5065566 agatgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaaca 5065467  T
Q  110 gtttatctcgtaaatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 209  Q
    ||||||||| || |||||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| |||||||||    
T  5065466 gtttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgct 5065367  T
Q  210 at-taagagaggtctcttctaatgcacaa 237  Q
     | || | ||| |||||||| ||||||||    
T  5065366 ttctaggcgagatctcttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  26 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaatg 125  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  ||||||||||||| |||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  126 atgaaccaat 135  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 5346207 - 5346327
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| ||    
T  5346207 agatgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagca 5346306  T
Q  110 gtttatctcgtaaatgatgaa 130  Q
     |||||||| || ||||||||    
T  5346307 atttatctcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
Q  12 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 111  Q
    |||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| ||||||||    
T  5398226 atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt 5398325  T
Q  112 ttatctcgtaaatgat 127  Q
    |||||| ||| |||||    
T  5398326 ttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 5180891 - 5180773
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| ||    
T  5180891 agatgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagca 5180792  T
Q  110 gtttatctcgtaaatgatg 128  Q
     ||||||| ||| ||||||    
T  5180791 atttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  29 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaatgatg 128  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||| | ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  129 aacca 133  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  29 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaatgatg 128  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||| | ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  129 aacca 133  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 5156130 - 5156007
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| ||||||    
T  5156130 agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaaca 5156031  T
Q  110 gtttatctcgtaaatgatgaacca 133  Q
    |||||||| ||| | |||||||||    
T  5156030 gtttatcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 5372275 - 5372398
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||||||||| ||||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| ||||||    
T  5372275 agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaaca 5372374  T
Q  110 gtttatctcgtaaatgatgaacca 133  Q
     ||||||||||| | |||||||||    
T  5372375 atttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 5098389 - 5098523
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| ||| | ||||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| ||    
T  5098389 agatgaggagagccagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagca 5098488  T
Q  110 gtttatctcgtaaatgatgaaccaatccgtgaaaa 144  Q
    |||||||| ||| ||||||||| |||  |||||||    
T  5098489 gtttatctggtatatgatgaacaaattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  30 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaatgatga 129  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| ||| |||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  130 ac 131  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 5351578 - 5351701
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| ||||| |||||  |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |    
T  5351578 agatgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagta 5351677  T
Q  110 gtttatctcgtaaatgatgaacca 133  Q
    |||||||||||| |||||||||||    
T  5351678 gtttatctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 5352980 - 5352855
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| ||||||    
T  5352980 agatgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaaca 5352881  T
Q  110 gtttatctcgtaaatgatgaaccaat 135  Q
     ||||||| ||| ||||| |||||||    
T  5352880 atttatctggtatatgataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 2939094 - 2939216
Alignment:
Q  11 gatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacag 110  Q
    |||||||| || ||||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  |||||     
T  2939094 gatgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaa 2939193  T
Q  111 tttatctcgtaaatgatgaacca 133  Q
    ||||||||||| |||||||||||    
T  2939194 tttatctcgtatatgatgaacca 2939216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 5072799 - 5072674
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| |||||  ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| |    
T  5072799 agatgatgagggcgagagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaata 5072700  T
Q  110 gtttatctcgtaaatgatgaaccaat 135  Q
     |||||||| || | |||||| ||||    
T  5072699 atttatctcatatacgatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
Q  23 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaa 122  Q
    ||||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| |||     
T  5283328 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat 5283229  T
Q  123 atgatg 128  Q
    ||||||    
T  5283228 atgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 5334363 - 5334455
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 102  Q
    ||||||||||||  |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334363 agatgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  34 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaatgatg 128  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||| ||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 5253718 - 5253819
Alignment:
Q  17 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 116  Q
    ||||| || |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || ||||||||||    
T  5253718 gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc 5253817  T
Q  117 tc 118  Q
    ||    
T  5253818 tc 5253819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 5124553 - 5124461
Alignment:
Q  17 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    ||||| || ||| ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | ||||||    
T  5124553 gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaaca 5124461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
Q  23 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaa 122  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | |||     
T  5256218 cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat 5256119  T
Q  123 atgatg 128  Q
    ||||||    
T  5256118 atgatg 5256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  24 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaaa 123  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| || |    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  124 tgatgaaccaatccgtgaaaatatggagcaatg 156  Q
    ||||||||||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  28 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtaaat 124  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| |||||||||||||||||| |     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  125 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 206  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 4132719 - 4132577
Alignment:
Q  23 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaa 122  Q
    |||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| ||     
T  4132719 cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4132623  T
Q  123 atgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 168  Q
    |||||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132622 atgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 4319406 - 4319296
Alignment:
Q  23 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtaa 122  Q
    |||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| ||     
T  4319406 cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4319307  T
Q  123 atgatgaacca 133  Q
    |||||||||||    
T  4319306 atgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  89 ttcattgtgaagaaaacaacagtttatctcgtaaatgatgaaccaat 135  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 47985511 - 47985393
Alignment:
Q  9 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 108  Q
    ||||||| |||||  |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  47985511 gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 47985412  T
Q  109 agtttatctcgtaaatgat 127  Q
    ||||||||| ||| |||||    
T  47985411 agtttatcttgtatatgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 48004085 - 48003967
Alignment:
Q  9 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 108  Q
    ||||||| |||||  |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  48004085 gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 48003986  T
Q  109 agtttatctcgtaaatgat 127  Q
    ||||||||| ||| |||||    
T  48003985 agtttatcttgtatatgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 47994798 - 47994680
Alignment:
Q  9 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 108  Q
    ||||||| |||||  ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  47994798 gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 47994699  T
Q  109 agtttatctcgtaaatgat 127  Q
    ||||||||| ||| |||||    
T  47994698 agtttatcttgtatatgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 48013370 - 48013252
Alignment:
Q  9 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 108  Q
    ||||||| |||||  ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  48013370 gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 48013271  T
Q  109 agtttatctcgtaaatgat 127  Q
    ||||||||| ||| |||||    
T  48013270 agtttatcttgtatatgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 36213038 - 36212913
Alignment:
Q  10 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 109  Q
    |||||| ||||| |||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |     
T  36213038 agatgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcg 36212939  T
Q  110 gtttatctcgtaaatgatgaaccaat 135  Q
     |||||||| |  |||||||||||||    
T  36212938 atttatctcatttatgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 7974 - 7887
Alignment:
Q  30 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatct 117  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatct 7887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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