View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_192 (Length: 281)
Name: NF9985A_low_192
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_192 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 23409147 - 23409413
Alignment:
| Q |
7 |
tctctaaccaaataaattgttggagtttttgttctgttaatttacagattaataaattgagctgttggagtgaagttacacatgaaaaatcaaagatgaa |
106 |
Q |
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|||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23409147 |
tctctaaccaaacaaattgttggattttgtgttctgttaatttttagattaataaattgagctgttggagtgaagttacccatgaaaaatcaaagatgaa |
23409246 |
T |
|
| Q |
107 |
tgttcaacacacaagccgaagcagggctgaacgtgtttctataagaaaagtgcagaacaaatttctcgacaactcttttggtaaattcaaacagcatgat |
206 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
23409247 |
tgttcaacacacaagccaaagcagggctgaacgtgtttctataagaaaagtgcagaacaaatttctctacaactcttttggtaaattcaaccagcatgat |
23409346 |
T |
|
| Q |
207 |
gttgtccccacatgttaaaatacaacgtggcaccacatgaaaggttacaatgcatcttatattattc |
273 |
Q |
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| T |
23409347 |
gttgtccccacatgttaaaatacaacgtagcaccacatgaaaggttataatgcatcttattttattc |
23409413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 2879344 - 2879487
Alignment:
| Q |
21 |
aattgttggagtttttgttctgttaatttacagattaataaattgagctgttggagtgaagttacacatgaaaaatcaaagatgaatgttcaacacacaa |
120 |
Q |
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|||| |||||||||||||||| ||||||| || | ||||||||||| |||||||||||| | | ||||| ||||||| | |||||||| || || |
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| T |
2879344 |
aatttttggagtttttgttctcttaatttttaggt-aataaattgagttgttggagtgaa-----aaaaaaaaaaccaaagatca-tgttcaacgcataa |
2879436 |
T |
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| Q |
121 |
gccgaagcagggctgaacgtgtttctataagaaaagtgcagaacaaatttc |
171 |
Q |
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| T |
2879437 |
gccaaagaagggctgaacttgtttccataagaaaagtgcagaacaaatttc |
2879487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 2867556 - 2867698
Alignment:
| Q |
21 |
aattgttggagtttttgttctgttaatttacagattaataaattgagctgttggagtgaagttacacatgaaaaatcaaagatgaatgttcaacacacaa |
120 |
Q |
| |
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|||| |||||||||||||||| ||||||| || | |||||||||||||||||||||||| | ||||| ||| ||| | |||||||| || || |
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| T |
2867556 |
aattcttggagtttttgttctcttaatttttaggt-aataaattgagctgttggagtgaaaaaa------aaaaaccaacgatca-tgttcaacgcataa |
2867647 |
T |
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| Q |
121 |
gccgaagcagggctgaacgtgtttctataagaaaagtgcagaacaaatttc |
171 |
Q |
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| T |
2867648 |
gccaaagaagggctgaacttgtttccataagaaaagtgcagaacaaatttc |
2867698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 53436031 - 53436174
Alignment:
| Q |
21 |
aattgttggagtttttgttctgttaatttacagattaataaattgagctgttggagtgaagttacacatgaaaaatcaaagatgaatgttcaacacacaa |
120 |
Q |
| |
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|||| |||||||||||||||| ||||||| || | ||||||||||| |||||||||||| | | ||||| ||||||| | |||||||| || || |
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| T |
53436031 |
aattcttggagtttttgttctcttaatttttaggt-aataaattgagttgttggagtgaa-----aaaaaaaaaaccaaagatca-tgttcaacgcataa |
53436123 |
T |
|
| Q |
121 |
gccgaagcagggctgaacgtgtttctataagaaaagtgcagaacaaatttc |
171 |
Q |
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||| ||| |||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
53436124 |
gccaaagaagggctgaacttgtttccataagaaaagtgcagaacaaatttc |
53436174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 559038 - 559072
Alignment:
| Q |
7 |
tctctaaccaaataaattgttggagtttttgttct |
41 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
559038 |
tctctaaccaaacaaattgttggagtttttgttct |
559072 |
T |
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