View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_204 (Length: 276)
Name: NF9985A_low_204
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_204 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 44951941 - 44952198
Alignment:
| Q |
19 |
acatctaaagtgctaagttaacgaagggtgaatggctgagttacatggtttataataaaaaatcaagacaaatactaagaagtatacataaaaataaagg |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44951941 |
acatttaaagtgctaagttaacgaagggtgaatggctgagttacatggtgtataataaaaaatcaagacaaatactaagaagtatacataaaaataaatg |
44952040 |
T |
|
| Q |
119 |
atttatggtagtcgtatgttataggacccatcgtgtatagagaagtaagattcatttaagatatacatattgcacatttatcaaatacacatttacttac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44952041 |
atttatggtagtcgtatgttataggacccatcgtgtatagagaagtaagattcacttaagatatacatattgcacatttatcaaatacacatttacttag |
44952140 |
T |
|
| Q |
219 |
gaacacgcatggtcacttgatacttctatttcacattttggtaacatttctaacttca |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44952141 |
aaacacgcatgttcacttgatacttctatttcacattttggtaacatttctaacttca |
44952198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University