View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_213 (Length: 268)
Name: NF9985A_low_213
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_213 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 27959385 - 27959137
Alignment:
| Q |
1 |
aatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaaga |
100 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959385 |
aatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaaga |
27959286 |
T |
|
| Q |
101 |
atattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959285 |
atattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactg |
27959186 |
T |
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| Q |
201 |
tctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959185 |
tctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
27959137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 27985693 - 27985445
Alignment:
| Q |
1 |
aatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaaga |
100 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
27985693 |
aatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggtttcaaagttctaaga |
27985594 |
T |
|
| Q |
101 |
atattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactg |
200 |
Q |
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| T |
27985593 |
ttattcacatcactccaataactttcatccattacctctacttctttgttttgcatgcacacagcagaagcacttgaggtgtaaacaactcttttcactg |
27985494 |
T |
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| Q |
201 |
tctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
249 |
Q |
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| T |
27985493 |
tctttgaatttttgcatgcttttagaattcctaatgccccatcaatggt |
27985445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 27994875 - 27994627
Alignment:
| Q |
1 |
aatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
27994875 |
aatatccaacccatgttgttctccaaattcaagaacagctttctcagctagtgtcttagaaacaccatatgaccaagcaaatggcttcaaagttctaaga |
27994776 |
T |
|
| Q |
101 |
atattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||| || |
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| T |
27994775 |
atattcacatcactccaataactttcatccattgtatcttcttctttatcttgcgtatacacagcagaagcactagaggtgtaaataactcttttcaatg |
27994676 |
T |
|
| Q |
201 |
tctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994675 |
tctttgaatttttgcatgcttttagaattcctaatgctccatcaatggt |
27994627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 28013543 - 28013308
Alignment:
| Q |
11 |
ccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacat |
110 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| || | |||||||||| | ||||||||||||||| || ||||||| |||||||| ||| ||| |
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| T |
28013543 |
ccatgttgttctccaaattcaagaacagctttctctgccatagttttagaaattgaatatgaccaagcaaatggtttcaaatctctaagaagattttcat |
28013444 |
T |
|
| Q |
111 |
cactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaatt |
210 |
Q |
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||||||||||||| |||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
28013443 |
cactccaataactctcatccattacatcatcatctttatcttgccaatacacagcagaagcacttgaagtgtaaataactctcttcacggtctttgaatt |
28013344 |
T |
|
| Q |
211 |
tttgcatgcttttagaattcctaatgctccatcaat |
246 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
28013343 |
tttgcatgcttttagaattcctaatgttccatcaat |
28013308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 28005600 - 28005369
Alignment:
| Q |
15 |
gttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcact |
114 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| || | |||||||||| | ||| |||||| |||| || ||||||| |||||||||||| ||||||| |
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| T |
28005600 |
gttgttctccaaactctagaacaaccttctctgccattgttttagaaattgaatacgaccaaccaaatggtttcaaatctctaagaatattttcatcact |
28005501 |
T |
|
| Q |
115 |
ccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaatttttg |
214 |
Q |
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||||||||| ||||||||||||| || ||||| |||||| |||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
28005500 |
ccaataactctcatccattacattgtcatctttatcttgccaatacactgctgaagcacttgaagtgtaaataactctcttcacggtctttgaatttttg |
28005401 |
T |
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| Q |
215 |
catgcttttagaattcctaatgctccatcaat |
246 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28005400 |
catgcttttagaattcctaatgctccatcaat |
28005369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 27944826 - 27944600
Alignment:
| Q |
11 |
ccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacat |
110 |
Q |
| |
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|||| |||||| |||||||| ||||||||||||||||| | || |||||||||||||| |||| |||| || || | | ||||||| | || |||| |
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| T |
27944826 |
ccattttgttcaccaaattcaagaacagctttctcagccaatgtcttagaaacagcataattccaaccaaatggtttaacacttctaagcaaatcaacat |
27944727 |
T |
|
| Q |
111 |
cactccaataactttcatccattacatcttcttctttgtc-ttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaat |
209 |
Q |
| |
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||||||||| ||| ||||||| ||||||| ||||| | ||| || | ||||||||| ||||||||||||| |||| ||| |||||||||||||||| |
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| T |
27944726 |
cactccaatcactctcatccaacacatctttgtcttttccattgaatgaa-acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaat |
27944628 |
T |
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| Q |
210 |
ttttgcatgcttttagaattcctaatgc |
237 |
Q |
| |
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| |||||||||| ||| |||||||| |
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| T |
27944627 |
tcacacatgcttttaaaatgcctaatgc |
27944600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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