View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_216 (Length: 268)

Name: NF9985A_low_216
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_216
NF9985A_low_216
[»] chr3 (2 HSPs)
chr3 (5-130)||(9215419-9215544)
chr3 (200-263)||(9215614-9215677)
[»] chr4 (4 HSPs)
chr4 (15-124)||(25158812-25158921)
chr4 (5-61)||(25253914-25253970)
chr4 (5-99)||(25179001-25179095)
chr4 (5-98)||(25167300-25167393)
[»] chr5 (1 HSPs)
chr5 (12-61)||(30363107-30363156)
[»] chr2 (1 HSPs)
chr2 (16-104)||(42292576-42292664)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 9215419 - 9215544
Alignment:
Q  5 ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcagtgtggttcaagaattttctcaaaaaa 104  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9215419 ttattctgtgagatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa 9215518  T
Q  105 gaaactaaacttatgtttcttgtgag 130  Q
    ||||||||||||||||||||||||||    
T  9215519 gaaactaaacttatgtttcttgtgag 9215544  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 9215614 - 9215677
Alignment:
Q  200 gttctaaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct 263  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9215614 gttctaaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct 9215677  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 25158921 - 25158812
Alignment:
Q  15 agatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcagtgtggttcaagaattttctcaaaaaagaaactaaac 114  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||| ||||  | |||||| ||||||| |||||||||||||||||||||||||| |    
T  25158921 agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagc 25158822  T
Q  115 ttatgtttct 124  Q
    ||||||||||    
T  25158821 ttatgtttct 25158812  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 25253914 - 25253970
Alignment:
Q  5 ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata 61  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25253914 ttatactgtgagatttggaatgacctttgtagattacaaaaatggtttgaaaagata 25253970  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 25179095 - 25179001
Alignment:
Q  5 ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcagtgtggttcaagaattttctca 99  Q
    |||| ||||||||||||||||||| ||| ||||||||||  ||||||||||||||||  | || ||||| | | |||||||||||||||||||||    
T  25179095 ttatactgtgagatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca 25179001  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 25167393 - 25167300
Alignment:
Q  5 ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcagtgtggttcaagaattttctc 98  Q
    |||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||  | || || || | | |||||||| |||||||||||    
T  25167393 ttatactgtgagatttggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc 25167300  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 30363107 - 30363156
Alignment:
Q  12 gtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata 61  Q
    ||||| |||||||||| ||||||||||||||| ||||  |||||||||||    
T  30363107 gtgaggtttggaatgaactttgtagattacaacaatgacttgaaaagata 30363156  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 42292576 - 42292664
Alignment:
Q  16 gatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcagtgtggttcaagaattttctcaaaaaa 104  Q
    ||||||| ||||  ||||| |||||||| ||||||||||||||| || | ||  | || ||| ||||||| | ||||||||||||||||    
T  42292576 gatttggcatgaattttgtggattacaaaaatggtttgaaaagacaccaaaagttgtcggcaatgtggtttacgaattttctcaaaaaa 42292664  T

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