View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_223 (Length: 264)

Name: NF9985A_low_223
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_223
NF9985A_low_223
[»] chr7 (23 HSPs)
chr7 (13-262)||(13833850-13834107)
chr7 (40-263)||(4949691-4949922)
chr7 (119-263)||(27436364-27436510)
chr7 (99-263)||(29024496-29024670)
chr7 (99-246)||(4829916-4830066)
chr7 (122-246)||(12586756-12586885)
chr7 (40-87)||(567181-567228)
chr7 (98-212)||(567249-567363)
chr7 (101-263)||(840529-840693)
chr7 (101-263)||(847705-847869)
chr7 (101-263)||(1205709-1205873)
chr7 (40-87)||(5207103-5207150)
chr7 (98-212)||(5207177-5207291)
chr7 (40-87)||(27974222-27974269)
chr7 (98-213)||(27974292-27974407)
chr7 (106-263)||(1959548-1959700)
chr7 (149-263)||(8812820-8812937)
chr7 (149-256)||(13268344-13268454)
chr7 (221-263)||(16270442-16270483)
chr7 (12-70)||(27436511-27436569)
chr7 (50-87)||(803203-803240)
chr7 (50-87)||(16292070-16292107)
chr7 (41-86)||(34136598-34136643)
[»] scaffold0023 (1 HSPs)
scaffold0023 (40-263)||(144311-144536)
[»] chr2 (19 HSPs)
chr2 (9-209)||(24287996-24288200)
chr2 (98-263)||(21857664-21857826)
chr2 (98-262)||(15950598-15950761)
chr2 (12-263)||(35140974-35141234)
chr2 (98-263)||(42572083-42572253)
chr2 (98-263)||(25494204-25494375)
chr2 (132-262)||(21112372-21112506)
chr2 (98-263)||(30691456-30691627)
chr2 (40-87)||(3763944-3763991)
chr2 (98-212)||(3764018-3764132)
chr2 (98-212)||(16275847-16275961)
chr2 (40-87)||(16275984-16276031)
chr2 (41-87)||(24692661-24692707)
chr2 (9-85)||(15950502-15950579)
chr2 (13-85)||(25494393-25494466)
chr2 (40-84)||(21857598-21857642)
chr2 (41-87)||(24701501-24701547)
chr2 (41-85)||(19990255-19990297)
chr2 (149-213)||(20278671-20278734)
[»] chr1 (12 HSPs)
chr1 (40-263)||(2387519-2387748)
chr1 (12-263)||(31542306-31542566)
chr1 (40-212)||(13471138-13471315)
chr1 (98-246)||(1958206-1958356)
chr1 (41-87)||(6202651-6202697)
chr1 (221-263)||(14817945-14817987)
chr1 (41-87)||(35072119-35072165)
chr1 (149-257)||(22430295-22430404)
chr1 (41-87)||(14817763-14817809)
chr1 (41-87)||(22430466-22430512)
chr1 (50-87)||(19371337-19371374)
chr1 (40-69)||(31554693-31554722)
[»] scaffold0056 (1 HSPs)
scaffold0056 (99-263)||(12327-12491)
[»] chr4 (24 HSPs)
chr4 (98-208)||(21529217-21529327)
chr4 (98-263)||(8100633-8100796)
chr4 (11-83)||(21529117-21529189)
chr4 (157-263)||(15077321-15077431)
chr4 (98-263)||(3359593-3359761)
chr4 (41-87)||(14919898-14919944)
chr4 (149-263)||(15079619-15079737)
chr4 (187-263)||(26218314-26218395)
chr4 (149-256)||(20556283-20556393)
chr4 (149-263)||(14883906-14884022)
chr4 (41-84)||(16725687-16725730)
chr4 (41-87)||(3386030-3386076)
chr4 (149-262)||(15900530-15900646)
chr4 (184-263)||(18038640-18038721)
chr4 (41-87)||(9187384-9187430)
chr4 (221-263)||(16725868-16725909)
chr4 (40-70)||(26218194-26218224)
chr4 (41-86)||(20556457-20556502)
chr4 (176-213)||(22706401-22706437)
chr4 (48-84)||(3841582-3841618)
chr4 (221-264)||(3841764-3841805)
chr4 (149-213)||(9187258-9187321)
chr4 (48-84)||(18038820-18038856)
chr4 (48-84)||(22706531-22706567)
[»] chr5 (31 HSPs)
chr5 (40-263)||(21993853-21994074)
chr5 (12-263)||(24962752-24963011)
chr5 (98-263)||(28846297-28846460)
chr5 (98-263)||(20378855-20379025)
chr5 (98-247)||(23638462-23638615)
chr5 (98-247)||(23834274-23834427)
chr5 (40-87)||(11811413-11811460)
chr5 (98-212)||(12178647-12178761)
chr5 (149-263)||(20097251-20097368)
chr5 (40-87)||(26087336-26087383)
chr5 (40-87)||(27231641-27231688)
chr5 (40-87)||(33842837-33842884)
chr5 (98-212)||(33842911-33843025)
chr5 (98-212)||(11811500-11811614)
chr5 (21-87)||(12178549-12178616)
chr5 (98-212)||(26087416-26087530)
chr5 (41-87)||(7259625-7259671)
chr5 (41-263)||(22956632-22956856)
chr5 (149-263)||(25528557-25528673)
chr5 (40-86)||(21865932-21865978)
chr5 (151-256)||(29895468-29895576)
chr5 (41-87)||(29895640-29895686)
chr5 (227-263)||(21866131-21866167)
chr5 (149-256)||(36450620-36450730)
chr5 (41-87)||(25528734-25528780)
chr5 (156-213)||(7789240-7789295)
chr5 (156-213)||(12393225-12393280)
chr5 (176-213)||(21690988-21691024)
chr5 (50-87)||(34464032-34464069)
chr5 (48-84)||(21691131-21691167)
chr5 (98-150)||(27231719-27231771)
[»] scaffold0605 (2 HSPs)
scaffold0605 (40-217)||(6752-6930)
scaffold0605 (221-263)||(6951-6992)
[»] chr6 (19 HSPs)
chr6 (12-263)||(25503960-25504223)
chr6 (98-263)||(28270215-28270386)
chr6 (98-263)||(28305184-28305355)
chr6 (98-263)||(28348965-28349136)
chr6 (40-212)||(16636568-16636740)
chr6 (157-263)||(22326252-22326361)
chr6 (40-87)||(27056280-27056327)
chr6 (149-263)||(27071864-27071982)
chr6 (98-212)||(27056372-27056486)
chr6 (149-263)||(620927-621044)
chr6 (149-246)||(20457035-20457137)
chr6 (184-263)||(27512326-27512407)
chr6 (156-256)||(22776802-22776905)
chr6 (149-263)||(19716025-19716143)
chr6 (41-84)||(20456925-20456968)
chr6 (41-87)||(18946917-18946963)
chr6 (41-87)||(27071751-27071797)
chr6 (156-213)||(20045665-20045720)
chr6 (48-84)||(27512506-27512542)
[»] chr8 (13 HSPs)
chr8 (99-263)||(17680490-17680652)
chr8 (9-263)||(39843053-39843307)
chr8 (98-263)||(6666095-6666261)
chr8 (102-263)||(24709061-24709225)
chr8 (149-246)||(20736106-20736209)
chr8 (149-246)||(20741148-20741251)
chr8 (149-246)||(20744664-20744767)
chr8 (27-87)||(6666280-6666341)
chr8 (9-85)||(17680396-17680473)
chr8 (149-256)||(22160721-22160831)
chr8 (46-87)||(32002307-32002348)
chr8 (41-87)||(25856759-25856805)
chr8 (151-213)||(25856869-25856930)
[»] chr3 (29 HSPs)
chr3 (98-263)||(9552601-9552770)
chr3 (12-263)||(41000646-41000906)
chr3 (12-263)||(41009428-41009688)
chr3 (16-264)||(8203013-8203274)
chr3 (40-212)||(25265956-25266126)
chr3 (12-263)||(17928180-17928433)
chr3 (41-263)||(15622816-15623041)
chr3 (149-263)||(6196772-6196889)
chr3 (40-87)||(10720212-10720259)
chr3 (98-212)||(10720282-10720396)
chr3 (110-263)||(3242908-3243063)
chr3 (157-263)||(8608541-8608652)
chr3 (149-263)||(14420658-14420777)
chr3 (41-263)||(70507-70729)
chr3 (149-256)||(33568231-33568341)
chr3 (168-262)||(11183806-11183903)
chr3 (149-245)||(12477128-12477227)
chr3 (41-87)||(12477020-12477066)
chr3 (41-87)||(14885303-14885349)
chr3 (150-213)||(14885413-14885475)
chr3 (41-87)||(8806886-8806932)
chr3 (40-70)||(15682664-15682694)
chr3 (156-213)||(8618874-8618929)
chr3 (41-86)||(14420843-14420888)
chr3 (50-87)||(20438484-20438521)
chr3 (41-86)||(23285626-23285671)
chr3 (50-87)||(41435649-41435686)
chr3 (149-213)||(23285736-23285799)
chr3 (157-213)||(46398287-46398341)
[»] scaffold0044 (1 HSPs)
scaffold0044 (12-263)||(74082-74345)
[»] scaffold0389 (1 HSPs)
scaffold0389 (40-263)||(2073-2300)
[»] scaffold0393 (1 HSPs)
scaffold0393 (149-263)||(3850-3968)
[»] scaffold2162 (2 HSPs)
scaffold2162 (40-87)||(452-499)
scaffold2162 (98-212)||(293-407)
[»] scaffold0202 (1 HSPs)
scaffold0202 (149-263)||(25380-25498)
[»] scaffold0138 (1 HSPs)
scaffold0138 (152-263)||(10516-10630)
[»] scaffold0357 (2 HSPs)
scaffold0357 (149-246)||(8701-8804)
scaffold0357 (41-87)||(8869-8915)
[»] scaffold0104 (1 HSPs)
scaffold0104 (41-263)||(37076-37303)
[»] scaffold0004 (1 HSPs)
scaffold0004 (149-263)||(192297-192414)
[»] scaffold0551 (2 HSPs)
scaffold0551 (41-87)||(4929-4975)
scaffold0551 (41-87)||(11043-11089)
[»] scaffold0582 (1 HSPs)
scaffold0582 (98-246)||(4881-5032)
[»] scaffold0478 (1 HSPs)
scaffold0478 (46-87)||(2-43)
[»] scaffold0435 (1 HSPs)
scaffold0435 (47-87)||(14277-14317)
[»] scaffold0306 (1 HSPs)
scaffold0306 (149-256)||(18012-18122)
[»] scaffold0132 (1 HSPs)
scaffold0132 (41-263)||(31237-31463)
[»] scaffold0364 (1 HSPs)
scaffold0364 (149-213)||(96-159)
[»] scaffold0243 (1 HSPs)
scaffold0243 (41-84)||(17062-17105)
[»] scaffold0320 (2 HSPs)
scaffold0320 (41-87)||(3839-3885)
scaffold0320 (149-213)||(3947-4010)
[»] scaffold0019 (1 HSPs)
scaffold0019 (41-87)||(18481-18527)
[»] scaffold0782 (1 HSPs)
scaffold0782 (50-87)||(5901-5938)
[»] scaffold0441 (1 HSPs)
scaffold0441 (47-84)||(9585-9622)
[»] scaffold0068 (2 HSPs)
scaffold0068 (176-213)||(22886-22922)
scaffold0068 (48-84)||(22743-22779)
[»] scaffold0014 (1 HSPs)
scaffold0014 (50-87)||(184177-184214)
[»] scaffold0362 (1 HSPs)
scaffold0362 (41-87)||(1580-1625)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 13834107 - 13833850
Alignment:
Q  13 gtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn---------gaagga 103  Q
    ||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||| ||||||||||||||||                   ||||||    
T  13834107 gtagaaacaaaatatgaaacacatactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagttttgttttttttttttttgaagga 13834008  T
Q  104 cttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13834007 cttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaa 13833908  T
Q  204 accaaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctctt 262  Q
    | |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  13833907 atcaaggaaagagtacaaaagctaaagcttagttaa-aatttttgaagttgtatctctt 13833850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 263
Target Start/End: Original strand, 4949691 - 4949922
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn------gaaggacttatcaaagtgaattgtaaacattgtaga 133  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||                |||||||||||||| ||||||||||||||| | |||    
T  4949691 agaaactatgaatgcaaaatgaggcatgatatgcttatgcaaaaatagatttttttttttttttgaaggacttatcaa-gtgaattgtaaacatggcaga 4949789  T
Q  134 ggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaa 228  Q
     |||||||  ||||||| ||| ||||||||||  ||||||  | ||||||||||||||||||||||||||||||||||||||||     || |||| |||    
T  4949790 cgaacatgatttcattt-gaaaattgtaaagatattgcaatagattcctttttcaaaaggtaagaacgaaaccaaggaaagagttctaaacaaaagttaa 4949888  T
Q  229 agcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||| ||||| |||||||||||||||    
T  4949889 agcttagttaaga-tttttaaagttgtatctcttg 4949922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 263
Target Start/End: Complemental strand, 27436510 - 27436364
Alignment:
Q  119 tgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt- 217  Q
    ||||||||  |||||||||||||| ||||||| ||| ||| ||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||     
T  27436510 tgtaaacacagtagaggaacatggtttcattt-gaaaattttaaagatattgcaataggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtt 27436412  T
Q  218 ----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
        || |||| ||||||||||||||||  |||||||| |||||||||||    
T  27436411 cttaacaaaagttaaagcttagttaaga--ttttgaagctgtatctcttg 27436364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 263
Target Start/End: Complemental strand, 29024670 - 29024496
Alignment:
Q  99 aaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    |||||||||||||||| |||| | ||||||||||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||| ||||||||||| | ||||    
T  29024670 aaggacttatcaaagttaatttttaaacattgtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggt-cctttttcaaatgataag 29024573  T
Q  198 aacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga------ttttttgaagttgtatctcttg 263  Q
    |||||||||||||||| |||     || ||||||||| |||||||||||      ||||||||||||||||||||||    
T  29024572 aacgaaaccaaggaaaaagttcttaacaaaagctaaaacttagttaagagattttttttttgaagttgtatctcttg 29024496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 4829916 - 4830066
Alignment:
Q  99 aaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaaga 198  Q
    ||||| || ||||||| ||||| ||||||| ||||||||| ||  ||||||| ||| ||||||||||  ||||||  |||||||||||||||||||||||    
T  4829916 aaggatttgtcaaagt-aattggaaacattatagaggaacgtgatttcattt-gaaaattgtaaagatattgcaataggttcctttttcaaaaggtaaga 4830013  T
Q  199 acgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttt 246  Q
    ||||||||||||||| |||     |  |||||||| |||||||||||||||||    
T  4830014 acgaaaccaaggaaaaagttcttaataaaagctaaggcttagttaagattttt 4830066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 12586885 - 12586756
Alignment:
Q  122 aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttccttttt-caaaaggtaagaacgaaaccaaggaaagagt--- 217  Q
    ||||||| ||||||||||||| |||||||  || ||||||||||  ||||||  ||||||||||| |||||||||||||||||||||| |||| |||       
T  12586885 aaacattatagaggaacatggtttcatttaaaa-attgtaaagatattgcaataggttccttttttcaaaaggtaagaacgaaaccaaagaaaaagttct 12586787  T
Q  218 --acgaaagctaaagcttagttaagattttt 246  Q
      || ||||||||||||||||||||||||||    
T  12586786 taacaaaagctaaagcttagttaagattttt 12586756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 567181 - 567228
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  567181 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 567228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 567249 - 567363
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  567249 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 567347  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  567348 gaacgaaaccaaggaa 567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 263
Target Start/End: Complemental strand, 840693 - 840529
Alignment:
Q  101 ggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaac 200  Q
    |||||| ||||||| | |||||||||||||||| ||||||||  | | |||||| ||| |||||   |||||||||||||| | ||| ||||||||||||    
T  840693 ggacttgtcaaagtaatttgtaaacattgtagaagaacatggactta-tttgaaaattataaaggtattgcaaacggttccctcttc-aaaggtaagaac 840596  T
Q  201 gaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||| |||     || |||| | || ||||||||||| ||||||||||||||| |||||    
T  840595 gaaaccaaggaaaaagttcttaacaaaagttgaaacttagttaaga-tttttgaagttgtatttcttg 840529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 263
Target Start/End: Complemental strand, 847869 - 847705
Alignment:
Q  101 ggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaac 200  Q
    |||||| ||||||| | |||||||||||||||| ||||||||  | | |||||| ||| |||||   |||||||||||||| | ||| ||||||||||||    
T  847869 ggacttgtcaaagtaatttgtaaacattgtagaagaacatggactta-tttgaaaattataaaggtattgcaaacggttccctcttc-aaaggtaagaac 847772  T
Q  201 gaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||| |||     || |||| | || ||||||||||| ||||||||||||||| |||||    
T  847771 gaaaccaaggaaaaagttcttaacaaaagttgaaacttagttaaga-tttttgaagttgtatttcttg 847705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 263
Target Start/End: Complemental strand, 1205873 - 1205709
Alignment:
Q  101 ggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaac 200  Q
    |||||| ||||||| | |||||||||||||||| ||||||||  | | |||||| ||| |||||   |||||||||||||| | ||| ||||||||||||    
T  1205873 ggacttgtcaaagtaatttgtaaacattgtagaagaacatggactta-tttgaaaattataaaggtattgcaaacggttccctcttc-aaaggtaagaac 1205776  T
Q  201 gaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||| |||     || |||| | || ||||||||||| ||||||||||||||| |||||    
T  1205775 gaaaccaaggaaaaagttcttaacaaaagttgaaacttagttaaga-tttttgaagttgtatttcttg 1205709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 5207103 - 5207150
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5207103 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 5207150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 5207177 - 5207291
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  5207177 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 5207275  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  5207276 gaacgaaaccaaggaa 5207291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 27974222 - 27974269
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27974222 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 27974269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 27974292 - 27974407
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||| | ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  27974292 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacattgtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 27974390  T
Q  197 gaacgaaaccaaggaaa 213  Q
    |||||||||||||||||    
T  27974391 gaacgaaaccaaggaaa 27974407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 1959548 - 1959700
Alignment:
Q  106 tatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaac 205  Q
    |||||||||||||||||||||||||||||||||||  ||| | |||||| ||||||||||  |||||| | ||||        ||| |||||||||||||    
T  1959548 tatcaaagtgaattgtaaacattgtagaggaacataacttta-tttgaaaattgtaaagatattgcaatcagttc--------aaaagtaagaacgaaac 1959638  T
Q  206 caaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||  |||     || |||||||||| ||| |||||| ||||||||||||||| |||||    
T  1959639 caaggaagaagttcttaacaaaagctaaagtttaattaaga-tttttgaagttgtatttcttg 1959700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 8812937 - 8812820
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| ||| |||  |||||| |||||||||| |||||||||||||||  ||| |||     || ||||||||||||||||||||||     
T  8812937 tttgaaaattgtgaagatgttccaattggttcccttttcaaaag-taagaacgaaaccaaaaaaaaagttcttaacaaaagctaaagcttagttaagat- 8812840  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  8812839 ttttgaagttgtatttcttg 8812820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 13268344 - 13268454
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||| ||| | |     || ||||||||||||||||||||  |    
T  13268344 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaagaaaaaaattcttaacaaaagctaaagcttagttaag-gt 13268441  T
Q  244 ttttgaagttgta 256  Q
    |||||||||||||    
T  13268442 ttttgaagttgta 13268454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 16270442 - 16270483
Alignment:
Q  221 aaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  16270442 aaagctaaagcttagttaaga-tttttgaagttgtatttcttg 16270483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 27436569 - 27436511
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaaatgatgcatgata 70  Q
    |||| ||||||||||||||||  | || |||||||||||||||||| ||||| ||||||    
T  27436569 ggtaaaaacaaaatatgagacatggactagaaactatgaatgcaaagtgatggatgata 27436511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 803203 - 803240
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  803203 aatgcaagatgatgcatgatatgcttatgcaaaaatag 803240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 16292070 - 16292107
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  16292070 aatgcaagatgatgcatgatatgcttatgcaaaaatag 16292107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 34136598 - 34136643
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaata 86  Q
    |||| |||| ||||||||||||||||| || |||||||||||||||    
T  34136598 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaata 34136643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 40 - 263
Target Start/End: Original strand, 144311 - 144536
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnng---aaggacttatcaaagtgaattgtaaacattgtagagga 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||              ||||||| |||||||||||||||||||||||||| |||    
T  144311 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagaattatattttttcaaggactaatcaaagtgaattgtaaacattgtagtgga 144410  T
Q  137 acatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtacgaaagctaaagcttagt 236  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  144411 acatggcttcattttggacattgtaaagacgttgcaaacggtttctttttcaaaaggtaagaacgaaaccaaggaaagagtactaaagctaaagcttagt 144510  T
Q  237 taagattttttgaagttgtatctcttg 263  Q
    ||||| ||||| |||||||||||||||    
T  144511 taaga-tttttaaagttgtatctcttg 144536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 24288200 - 24287996
Alignment:
Q  9 gctggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn----gaaggac 104  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||  ||||||||||||||||              |||||||    
T  24288200 gctggtagaaacaaaatatgagacacggactagaaactatgaatgcaaaatgatgcatgatgtgcttatgcaaaaatagataaaaaaaattttgaaggac 24288101  T
Q  105 ttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaa 204  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24288100 ttatcaaagtgaattgtaaacattatagaggaacatggtttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaa 24288001  T
Q  205 ccaag 209  Q
    |||||    
T  24288000 ccaag 24287996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 21857664 - 21857826
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    |||||||||||||||| ||| ||||||||  |||   ||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21857664 gaaggacttatcaaagcgaaatgtaaacacagtac--gaatatggtttcattttgaatattgtaaagacgtcgcaaacggttcctttttcaaaaggtaag 21857761  T
Q  198 aacgaaaccaaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  21857762 aacgaaaccaaggaaaaagtacaaaagctaaagctcagttaaga-tttttgaagttgtatctcttg 21857826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 15950598 - 15950761
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||||| ||||  |||||||||||||||||||||||||||||    
T  15950598 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaacggttcctttttcaaaaggtaa 15950696  T
Q  197 gaacgaaaccaaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctctt 262  Q
    |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  15950697 gaacgaaatcaaggaaagagtacaaaagctaaagcttagttaa-attttttgaagttgtatctctt 15950761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 35141234 - 35140974
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn---gaaggactta 107  Q
    ||||||| |||||||||||||  | || ||||| |||||||||||||||||||||||||| ||||||||||||||||             ||||||||||    
T  35141234 ggtagaagcaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataatttttttttgaaggactta 35141135  T
Q  108 tcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaacca 207  Q
    ||||||||||||||||||||||| ||||||||| | |||| |||||| ||||||||||  ||||||  |||| |||||| ||||| ||||||||||||||    
T  35141134 tcaaagtgaattgtaaacattgtcgaggaacatagtttca-tttgaaaattgtaaagatattgcaataggtt-cttttttaaaagttaagaacgaaacca 35141037  T
Q  208 aggaaagagt-----acgaaagctaaagcttagttaaga--ttttttgaagttgtatctcttg 263  Q
    |||||| | |     || |||||||| ||||||||||||  ||||||||||||||||||||||    
T  35141036 aggaaaaacttcttaacaaaagctaaggcttagttaagattttttttgaagttgtatctcttg 35140974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 42572083 - 42572253
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||||| |||||||||||||||    
T  42572083 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggttcttttttcaaaaggtaa 42572181  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
     | |||||||||||||| |||     || |||||||||||||||||||||||||||||||||||||||||||    
T  42572182 aatcgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaagattttttgaagttgtatctcttg 42572253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 25494375 - 25494204
Alignment:
Q  98 gaaggacttatcaaagt-gaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| ||||||| || || ||||||| |||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||| | |||||||||||||||    
T  25494375 gaaggacttgtcaaagttgatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggtccttttttcaaaaggtaa 25494277  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    ||||||||||||||||| |||     || ||||||||||||||||||||| ||||||||||||||||||||||    
T  25494276 gaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaagatttttttgaagttgtatctcttg 25494204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 262
Target Start/End: Complemental strand, 21112506 - 21112372
Alignment:
Q  132 gaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagct 226  Q
    ||||||||||| || |||||||| |||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||| |||     | ||||||     
T  21112506 gaggaacatggttttattttgaaaattgtaaagatgtcgcaaacgattcctttttcaacaggtaagaacgaaaccaaggaaaaagttcttaatgaaagcg 21112407  T
Q  227 aaagcttagttaagattttttgaagttgtatctctt 262  Q
    ||||||||||||||| ||||||||||||||||||||    
T  21112406 aaagcttagttaaga-tttttgaagttgtatctctt 21112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 30691456 - 30691627
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||| | ||||  ||||||| ||||| |||||||||||||||    
T  30691456 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaa 30691554  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    || ||||||||| |||| |||     || |||||||||| |||||||||| ||||||||||||||||||||||    
T  30691555 gatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagttaagatttttttgaagttgtatctcttg 30691627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 3763944 - 3763991
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3763944 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 3763991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 3764018 - 3764132
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  3764018 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 3764116  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  3764117 gaacgaaaccaaggaa 3764132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 16275961 - 16275847
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  16275961 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 16275863  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  16275862 gaacgaaaccaaggaa 16275847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 16276031 - 16275984
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16276031 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 16275984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 24692707 - 24692661
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||||    
T  24692707 gaaattatgaatgcaaaatgatgcacgatatgcttatgcaaaaatag 24692661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 15950502 - 15950579
Alignment:
Q  9 gctggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaa-atgatgcatgataggcttatgcaaaaat 85  Q
    |||||||||||||||||||||||  |  || |||||||||||||||||| ||||||||| |||   ||||||||||||    
T  15950502 gctggtagaaacaaaatatgagatacagactagaaactatgaatgcaaagatgatgcattatatatttatgcaaaaat 15950579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 25494466 - 25494393
Alignment:
Q  13 gtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaa-atgatgcatgataggcttatgcaaaaat 85  Q
    |||||||||||||||||||  |  || |||||||||||||||||| |||||||||||||   ||||||||||||    
T  25494466 gtagaaacaaaatatgagatacagactagaaactatgaatgcaaagatgatgcatgatatatttatgcaaaaat 25494393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 21857598 - 21857642
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  21857598 agaaactatgaatacaaaatgatgcatgatatgcttatgaaaaaa 21857642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 24701547 - 24701501
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||| |||| | ||||||||||||||    
T  24701547 gaaattatgaatgcaaaatgatgcacgatatgtttatgcaaaaatag 24701501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 19990297 - 19990255
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaat 85  Q
    |||||||||||||||||||||||||||  | ||||||||||||||    
T  19990297 gaaactatgaatgcaaaatgatgcatg--acgcttatgcaaaaat 19990255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 20278671 - 20278734
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||| |||||||    
T  20278671 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaactaaggaaa 20278734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 2387748 - 2387519
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn------gaaggacttatcaaagtgaattg-taaacattgtag 132  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||                 |||||||||||| |||| ||||  ||||||||||||    
T  2387748 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatatataaatttttatttttgaaggacttatcgaagttaatttctaaacattgtag 2387649  T
Q  133 aggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtacgaaagctaaagct 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  2387648 aggaacatggtttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaagctaagaacgaaaccaaggaaagagtacaaaagcttaagct 2387549  T
Q  233 tagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||| ||||||||||||||||||||    
T  2387548 tagttaagat-ttttgaagttgtatctcttg 2387519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 31542566 - 31542306
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn----gaaggactt 106  Q
    ||||||| |||||||||||||  | || ||||| |||||||||||||||||||||||||| ||||||||||||||||              |||||||||    
T  31542566 ggtagaagcaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttttttttgaaggactt 31542467  T
Q  107 atcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaacc 206  Q
    |||||||||||||||||||||||| ||||||||| | |||| |||||| ||||||||||  ||||||  |||| |||||||||||| |||||||||||||    
T  31542466 atcaaagtgaattgtaaacattgtcgaggaacatagtttca-tttgaaaattgtaaagatattgcaataggtt-ctttttcaaaagttaagaacgaaacc 31542369  T
Q  207 aaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    ||||||| | |     || |||||||| |||||||||||| ||||||||||||||||||||||    
T  31542368 aaggaaaaacttcttaacaaaagctaaggcttagttaagatttttttgaagttgtatctcttg 31542306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 13471315 - 13471138
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnng-----aaggacttatcaaagtgaattgtaaacattgtagag 134  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||                |||||||| |||||||||| ||||||||| | || |    
T  13471315 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacatttttttttttttaaggacttgtcaaagtgaaatgtaaacatggcagcg 13471216  T
Q  135 gaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaagaacgaaaccaaggaa 212  Q
    |||||||| ||||||| ||| ||||||||||  ||| |||  |||| ||||||||||||||||||||||||||||||||    
T  13471215 gaacatggtttcattt-gaaaattgtaaagatattgacaataggtttctttttcaaaaggtaagaacgaaaccaaggaa 13471138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 1958356 - 1958206
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    ||||||||| ||||||| |||||||||| ||| | |||||||| | || |||| ||| ||||| |||| |||||||  |||||| |||||||||| ||||    
T  1958356 gaaggacttgtcaaagt-aattgtaaac-ttgaaaaggaacattgttttattt-gaaaattgtgaagatgttgcaattggttcccttttcaaaag-taag 1958261  T
Q  198 aacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagattttt 246  Q
    |||||||||||||| || |||     || ||||||||||||||||||||||||||    
T  1958260 aacgaaaccaaggataaaagttcttaacaaaagctaaagcttagttaagattttt 1958206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 6202651 - 6202697
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  6202651 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 6202697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 14817945 - 14817987
Alignment:
Q  221 aaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  14817945 aaagctaaagcttagttaagattttttgaagttgtatttcttg 14817987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 35072165 - 35072119
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  35072165 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 35072119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 22430404 - 22430295
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtac----gaaagctaaagcttagttaagattt 244  Q
    |||||| ||||| |||| |||||||  |||||| ||||||||||  |||||||||| |||||||| ||| |    ||||||||||||||||||||||  |    
T  22430404 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaagc-aagaacgaaatcaaggaaaaagttcttaagaaagctaaagcttagttaaga--t 22430308  T
Q  245 tttgaagttgtat 257  Q
    |||||||||||||    
T  22430307 tttgaagttgtat 22430295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 14817763 - 14817809
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  14817763 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 14817809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 22430512 - 22430466
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||| |||||||||||||| || ||||||||||||||||    
T  22430512 gaaattatgaatacaaaatgatgcatggtatgcttatgcaaaaatag 22430466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 19371374 - 19371337
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  19371374 aatgcaaaatggtgcatgatatgcttatgcaaaaatag 19371337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 31554722 - 31554693
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgat 69  Q
    ||||||||||||||||||||||||||||||    
T  31554722 agaaactatgaatgcaaaatgatgcatgat 31554693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 263
Target Start/End: Complemental strand, 12491 - 12327
Alignment:
Q  99 aaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaaga 198  Q
    |||||||| |||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  12491 aaggacttgtcaaagtgaattgtaaacacagtagaggaacatggtttcattttgaatattgtaaagtcgttgcaaacggttcctttttcaaaaggtaaga 12392  T
Q  199 acgaaaccaaggaaagagtacgaaagctaaagc-ttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  12391 acgaaaccaaggaaagagtacaaaagctaaagctttagttaaga-tttttgaagttgtatctcttg 12327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 21529217 - 21529327
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21529217 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 21529316  T
Q  198 aacgaaaccaa 208  Q
    ||| |||||||    
T  21529317 aacaaaaccaa 21529327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 8100633 - 8100796
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||| |||||||||||||||||    
T  8100633 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggt-cctttttcaaaaggtaa 8100730  T
Q  197 gaacgaaaccaaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  8100731 gaacgaaaccaaggaaaaagtacaaaagctaaagctcagttaaga-tttttgaagttgtatctcttg 8100796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 21529117 - 21529189
Alignment:
Q  11 tggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaaatgatgcatgataggcttatgcaaaa 83  Q
    |||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||| ||||||||||||    
T  21529117 tggtggaaacaaaatatgagacacggactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaa 21529189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 15077321 - 15077431
Alignment:
Q  157 ttgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaag-agt-----acgaaagctaaagcttagttaagattttttgaa 250  Q
    |||| |||| |||||||  |||||| |||||||||| ||||||||||||||||||||| |||     || ||||||||||||||||||||| ||||||||    
T  15077321 ttgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaagaagttcttaacaaaagctaaagcttagttaaga-tttttgaa 15077418  T
Q  251 gttgtatctcttg 263  Q
    ||||||| |||||    
T  15077419 gttgtatttcttg 15077431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 3359761 - 3359593
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttc-aaaaggtaa 196  Q
    |||||| || ||||||||| ||| ||||||| |||| |||||| | ||||||| ||| ||||||||||  ||||||  ||||  |||||| |||||||||    
T  3359761 gaaggatttgtcaaagtga-ttggaaacattatagaagaacattgtttcattt-gaaaattgtaaagatattgcaataggtttttttttccaaaaggtaa 3359664  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    || |||| |||||| || |||     || |||||||||||||||||||||| |||||||||||||| |||||    
T  3359663 gagcgaacccaagggaaaagttcttaacaaaagctaaagcttagttaagat-ttttgaagttgtatttcttg 3359593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 14919944 - 14919898
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  14919944 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 14919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 15079619 - 15079737
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaaga------gtacgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| |        || |||||||||||||||||||||     
T  15079619 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaaattcttaacaaaagctaaagcttagttaaga- 15079716  T
Q  243 tttttgaagttgtatctcttg 263  Q
    ||||||||||||||| |||||    
T  15079717 tttttgaagttgtatttcttg 15079737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 26218314 - 26218395
Alignment:
Q  187 caaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||||| | |||||||||||| |||     || |||| |||| |||||||||||||||||||||||||||||||||    
T  26218314 caaaaggtaagatcaaaaccaaggaaaaagttcttaacaaaagttaaaacttagttaagattttttgaagttgtatctcttg 26218395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 20556393 - 20556283
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  |    
T  20556393 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagttaag-gt 20556296  T
Q  244 ttttgaagttgta 256  Q
    |||||||||||||    
T  20556295 ttttgaagttgta 20556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 14884022 - 14883906
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||| ||||| ||      || ||||||||||||||||||||||     
T  14884022 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaacca-ggaaaaagctattaacaaaagctaaagcttagttaagat- 14883926  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  14883925 ttttgaagttgtatttcttg 14883906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 16725687 - 16725730
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  16725687 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaa 16725730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 3386030 - 3386076
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  3386030 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 3386076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 15900530 - 15900646
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtacg-----aaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  || ||| |||||||||| ||||||||||||| |||||| ||| |      ||||||||||||||||||||| |    
T  15900530 tttgaaaattgtgaagatgttgcaattggctcccttttcaaaag-taagaacgaaaccgaggaaaaagttcttaataaaagctaaagcttagttaaga-t 15900627  T
Q  244 ttttgaagttgtatctctt 262  Q
    |||||||||||||| ||||    
T  15900628 ttttgaagttgtatttctt 15900646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 18038721 - 18038640
Alignment:
Q  184 tttcaaaaggtaagaacgaaaccaaggaaagagt----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||| |||||||||||||||||||||  |    || |||||||||||||||||||||| |||||||||||||| |||||    
T  18038721 tttcaaaag-taagaacgaaaccaaggaaaggttcttaacaaaagctaaagcttagttaagat-ttttgaagttgtatttcttg 18038640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 9187430 - 9187384
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  9187430 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatag 9187384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 16725868 - 16725909
Alignment:
Q  221 aaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  16725868 aaagctaaagcttagttaaga-tttttgaagttgtatttcttg 16725909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 26218194 - 26218224
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgata 70  Q
    |||||||||||||||||||||||||||||||    
T  26218194 agaaactatgaatgcaaaatgatgcatgata 26218224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 20556502 - 20556457
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaata 86  Q
    |||| |||| ||||||||||||||||| || |||||||||||||||    
T  20556502 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaata 20556457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 22706437 - 22706401
Alignment:
Q  176 ggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22706437 ggttcctttttcaaaag-taagaacgaaaccaaggaaa 22706401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 3841582 - 3841618
Alignment:
Q  48 tgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||    
T  3841582 tgaatgcaaaatgatgtatgatatgcttatgcaaaaa 3841618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 3841764 - 3841805
Alignment:
Q  221 aaagctaaagcttagttaagattttttgaagttgtatctcttga 264  Q
    |||||||||||||||||||||  |||||||||||||| ||||||    
T  3841764 aaagctaaagcttagttaaga--ttttgaagttgtatttcttga 3841805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 9187321 - 9187258
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||||| ||||| |||| |||||||  |||| | |||||||||| ||||||||||||||||||||    
T  9187321 tttgaaaattgtgaagatgttgcaattggtttccttttcaaaag-taagaacgaaaccaaggaaa 9187258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 18038856 - 18038820
Alignment:
Q  48 tgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||    
T  18038856 tgaatgcaaaatgatgtatgatatgcttatgcaaaaa 18038820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 22706567 - 22706531
Alignment:
Q  48 tgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||    
T  22706567 tgaatgcaaaatgatgtatgatatgcttatgcaaaaa 22706531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 40 - 263
Target Start/End: Original strand, 21993853 - 21994074
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaa-atagnnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaac 138  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||| |||           |||||||||||||||| ||| ||||||||  |||   |||     
T  21993853 agaaactatgaatacaaaatgatgcatgatatgcttatgaaaaagataataatttttttgaaggacttatcaaagcgaaatgtaaacacagtac--gaat 21993950  T
Q  139 atggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtacgaaagctaaagcttagtta 238  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  21993951 atggtttcattttgaatattgtaaagacgtcgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaaaagtacaaaagctaaagctcagtta 21994050  T
Q  239 agattttttgaagttgtatctcttg 263  Q
    ||| |||||||||||||||||||||    
T  21994051 aga-tttttgaagttgtatctcttg 21994074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 24962752 - 24963011
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn---gaaggactta 107  Q
    ||||||| |||||||||||||  | || ||||| |||||||||||||||||||||||||| ||||||||||||||||             ||||||||||    
T  24962752 ggtagaagcaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataatttttttttgaaggactta 24962851  T
Q  108 tcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaacca 207  Q
    ||||||||||||||||||||||| ||||||||| | |||| |||||| ||||||||||  ||||||  |||| |||||||||||| ||||||||||||||    
T  24962852 tcaaagtgaattgtaaacattgtcgaggaacatagtttca-tttgaaaattgtaaagatattgcaataggtt-ctttttcaaaagttaagaacgaaacca 24962949  T
Q  208 aggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    |||||| | |     || |||||||| |||||||||||| ||||||||||||||||||||||    
T  24962950 aggaaaaacttcttaacaaaagctaaggcttagttaagatttttttgaagttgtatctcttg 24963011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 28846460 - 28846297
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||| |||||||||||||||||    
T  28846460 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggt-cctttttcaaaaggtaa 28846363  T
Q  197 gaacgaaaccaaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  28846362 gaacgaaaccaaggaaaaagtacaaaagctaaagctcagttaagat-ttttgaagttgtatctcttg 28846297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 20379025 - 20378855
Alignment:
Q  98 gaaggacttatcaaagtgaa-ttgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| || || ||||||| |||||| ||||||| |||| |||||| ||| | ||||  ||||||| |||| ||||||| ||||||||    
T  20379025 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttca-tttgaaaattatgaagatattgcaaaaggtt-ctttttcgaaaggtaa 20378928  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    || ||||||||| |||| |||     || |||||||||| |||||||||| ||||||||||||||||||||||    
T  20378927 gatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagttaagatttttttgaagttgtatctcttg 20378855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 23638615 - 23638462
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | ||||||||||||  ||||||| ||||||| ||| ||||| ||||  ||||||| ||| ||||||||||| | |||    
T  23638615 gaaggacttatcaaagttaatttttaaacattgtagataaacatggtttcattt-gaaaattgtgaagatattgcaaaaggt-cctttttcaaatgataa 23638518  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatttttt 247  Q
    ||||||||||||||||| |||     || |||| ||||||||||||||||||||||    
T  23638517 gaacgaaaccaaggaaaaagttcttaacaaaagttaaagcttagttaagatttttt 23638462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 23834274 - 23834427
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | ||||||||||||  ||||||| ||||||| ||| ||||| ||||  ||||||| ||| ||||||||||| | |||    
T  23834274 gaaggacttatcaaagttaatttttaaacattgtagataaacatggtttcattt-gaaaattgtgaagatattgcaaaaggt-cctttttcaaatgataa 23834371  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatttttt 247  Q
    ||||||||||||||||| |||     || |||| ||||||||||||||||||||||    
T  23834372 gaacgaaaccaaggaaaaagttcttaacaaaagttaaagcttagttaagatttttt 23834427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 11811413 - 11811460
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11811413 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 11811460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 12178647 - 12178761
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  12178647 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 12178745  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  12178746 gaacgaaaccaaggaa 12178761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 20097251 - 20097368
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||| | |||||||||| |||||||||||||||||||| |||     || ||||||||||||||||||||| |    
T  20097251 tttgaaaattgtgaagatgttgcaattggtttccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaaga-t 20097348  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  20097349 ttttgaagttgtatttcttg 20097368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 26087336 - 26087383
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26087336 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 26087383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 27231641 - 27231688
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27231641 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 27231688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 33842837 - 33842884
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33842837 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 33842884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 33842911 - 33843025
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  33842911 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 33843009  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  33843010 gaacgaaaccaaggaa 33843025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 11811500 - 11811614
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaaga-cgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| |||| |||||| ||||| ||||   || |||  |||| ||||||| ||||||||    
T  11811500 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttca-tttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaa 11811598  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  11811599 gaacgaaaccaaggaa 11811614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 12178549 - 12178616
Alignment:
Q  21 aaaatatgagacgcgtaccagaaactatgaatgcaaa-atgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||  | || |||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  12178549 aaaatatgagacatggactagaaactatgaatgcaaagatgatgcatgatatgcttatgcaaaaatag 12178616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 26087416 - 26087530
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaaga-cgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| |||| |||||| ||||| ||||   || |||  |||| ||||||| ||||||||    
T  26087416 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttca-tttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaa 26087514  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  26087515 gaacgaaaccaaggaa 26087530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 7259625 - 7259671
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  7259625 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 7259671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 263
Target Start/End: Original strand, 22956632 - 22956856
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag--nnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaac 138  Q
    |||| ||||||| |||||||||||||| || ||||||||||||||||            ||||||||| ||||||| |||||||||| |||   ||||||    
T  22956632 gaaattatgaatacaaaatgatgcatgttatgcttatgcaaaaatagacacattttcttgaaggacttgtcaaagt-aattgtaaac-ttgataaggaac 22956729  T
Q  139 atggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagctt 233  Q
    || | || | |||||| ||||| || | |||||||  ||||||  |||| || |||||||||||||||||||||| |||     || |||||||||||||    
T  22956730 attgtttta-tttgaaaattgtgaaaatgttgcaattggttcc-ctttccaagggtaagaacgaaaccaaggaaaaagttcttaacaaaagctaaagctt 22956827  T
Q  234 agttaagattttttgaagttgtatctcttg 263  Q
    |||||||| ||||||||||||||| |||||    
T  22956828 agttaaga-tttttgaagttgtatttcttg 22956856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 25528673 - 25528557
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtacg-----aaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||| ||||||||||||| ||| |      ||||||||||||||||||||||     
T  25528673 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaatgaaaccaaggaaa-agttcttagcaaaagctaaagcttagttaagat- 25528577  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  25528576 ttttgaagttgtatttcttg 25528557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 21865932 - 21865978
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaata 86  Q
    |||||||||||| |||||||||||||||||| ||||| |||||||||    
T  21865932 agaaactatgaacgcaaaatgatgcatgatatgcttacgcaaaaata 21865978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 29895576 - 29895468
Alignment:
Q  151 tgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatttt 245  Q
    |||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  |||    
T  29895576 tgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagttaag-gttt 29895479  T
Q  246 ttgaagttgta 256  Q
    |||||||||||    
T  29895478 ttgaagttgta 29895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 29895686 - 29895640
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  29895686 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 29895640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 21866131 - 21866167
Alignment:
Q  227 aaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21866131 aaagcttagttaagatttttttaagttgtatctcttg 21866167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 36450730 - 36450620
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  ||||||  ||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  |    
T  36450730 tttgaaaattgtgaagatgttgcaattggttcccatttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagttaag-gt 36450633  T
Q  244 ttttgaagttgta 256  Q
    |||||||||||||    
T  36450632 ttttgaagttgta 36450620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 25528780 - 25528734
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||| |||||||||| || ||||||||||||||||    
T  25528780 gaaattatgaatgcaatatgatgcatgctatgcttatgcaaaaatag 25528734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 7789295 - 7789240
Alignment:
Q  156 attgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||||    
T  7789295 attgtaaagacgttgcaattggttcccttt-caaaag-taagaacgaaaccaaggaaa 7789240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 12393225 - 12393280
Alignment:
Q  156 attgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||||    
T  12393225 attgtaaagacgttgcaattggttcccttt-caaaag-taagaacgaaaccaaggaaa 12393280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 21691024 - 21690988
Alignment:
Q  176 ggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21691024 ggttcctttttcaaaag-taagaacgaaaccaaggaaa 21690988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 34464069 - 34464032
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  34464069 aatgcaagatgatgcatgatatgcttatgcaaaaatag 34464032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 21691167 - 21691131
Alignment:
Q  48 tgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||    
T  21691167 tgaatgcaaaatgatgtatgatatgcttatgcaaaaa 21691131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 27231719 - 27231771
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattt 150  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| |||||||    
T  27231719 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt 27231771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 6752 - 6930
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn--gaaggacttatcaaagtgaattgtaaacattgtagaggaa 137  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||            |||||||||||||||||||||||||||| ||||||||| |    
T  6752 agaaattatgaatgcaaaatgatgcatgatatgcttatgtaaaaatagacaattttttttgaaggacttatcaaagtgaattgtaaacgttgtagaggga 6851  T
Q  138 catggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt 217  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||    
T  6852 catggtttcattttgaacattgtaaagacgttgc-aacggttccctttttgaaaggtaagaacgaaaccaaggaaagagt 6930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 6951 - 6992
Alignment:
Q  221 aaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  6951 aaagctaaagcttagttacga-tttttgaagttgtatctcttg 6992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 25503960 - 25504223
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn-------gaagga 103  Q
    |||||||||||||||||||||  | || ||||| |||||||||||||||||||||||||| ||||||||||||||||                 ||||||    
T  25503960 ggtagaaacaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataaaaaaataaaatttgaagga 25504059  T
Q  104 cttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaa 203  Q
    ||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||  ||||||  |||| |||||||||||| ||||||| ||    
T  25504060 cttatcaaagtgaattgtaaacattgtagaggaacatagtttca-tttgaaaattgtaaagatattgcaataggtt-ctttttcaaaagttaagaactaa 25504157  T
Q  204 accaaggaaagagt-----acgaaagctaaagcttagttaagat-tttttgaagttgtatctcttg 263  Q
    |||||||||| |||     || |||||||||||||||||||||| |||||||||||||||||||||    
T  25504158 accaaggaaaaagttcttaacaaaagctaaagcttagttaagatatttttgaagttgtatctcttg 25504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 28270386 - 28270215
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||| | ||||  ||||||| ||||| |||||||||||||||    
T  28270386 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaa 28270288  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    || ||||||||| |||| |||     || |||||||||| |||||||||| ||||||||||||||||||||||    
T  28270287 gatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagttaagatttttttgaagttgtatctcttg 28270215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 28305355 - 28305184
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||| | ||||  ||||||| ||||| |||||||||||||||    
T  28305355 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaa 28305257  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    || ||||||||| |||| |||     || |||||||||| |||||||||| ||||||||||||||||||||||    
T  28305256 gatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagttaagatttttttgaagttgtatctcttg 28305184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 28349136 - 28348965
Alignment:
Q  98 gaaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||| | ||||  ||||||| ||||| |||||||||||||||    
T  28349136 gaaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattatgaagatattgcaaaaggttcttttttcaaaaggtaa 28349038  T
Q  197 gaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaaga-ttttttgaagttgtatctcttg 263  Q
    || ||||||||| |||| |||     || |||||||||| |||||||||| ||||||||||||||||||||||    
T  28349037 gatcgaaaccaaagaaaaagttcttaacaaaagctaaagtttagttaagatttttttgaagttgtatctcttg 28348965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 16636740 - 16636568
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaaca 139  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||          ||||||||| | |||||||| ||||||||| | |||||||||    
T  16636740 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagatttttttttgaaggacttgttaaagtgaaatgtaaacatggcagaggaaca 16636641  T
Q  140 tggcttcattttgaacattgtaaaga-cgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaa 212  Q
    ||| |||| | |||| ||||| ||||   || |||  |||| |||||||||||||||||||||||| |||||||    
T  16636640 tggtttca-tatgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaatcaaggaa 16636568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 22326361 - 22326252
Alignment:
Q  157 ttgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaag 251  Q
    |||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| |||     || |||||||||||||||||||||| ||||||||    
T  22326361 ttgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaagat-ttttgaag 22326264  T
Q  252 ttgtatctcttg 263  Q
    |||||| |||||    
T  22326263 ttgtatttcttg 22326252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 27056280 - 27056327
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27056280 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 27056327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 27071864 - 27071982
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| |       || |||||||||||||||||||| ||    
T  27071864 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaaatcttaacaaaagctaaagcttagttaaggtt 27071962  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  27071963 ttttgaagttgtatttcttg 27071982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 27056372 - 27056486
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaaga-cgttgcaaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| |||| |||||| ||||| ||||   || |||  |||| ||||||| ||||||||    
T  27056372 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttca-tttgaaaattgtcaagatatttacaataggtttctttttccaaaggtaa 27056470  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  27056471 gaacgaaaccaaggaa 27056486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 620927 - 621044
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| ||| |||  |||||| |||||||||| |||||||||||||||  ||| |||     || |||||||||||||||||||| ||    
T  620927 tttgaaaattgtgaagatgttccaattggttcccttttcaaaag-taagaacgaaaccaaaaaaaaagttcttaacaaaagctaaagcttagttaag-tt 621024  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  621025 ttttgaagttgtatttcttg 621044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 20457035 - 20457137
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||| || |||     || ||||||||||||||||||||||    
T  20457035 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagttaagat 20457133  T
Q  243 tttt 246  Q
    ||||    
T  20457134 tttt 20457137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 27512407 - 27512326
Alignment:
Q  184 tttcaaaaggtaagaacgaaaccaaggaaagagt----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||||||||| |||||||||||||||||||||  |    || |||||||||||||||||||||| |||||||||||||| |||||    
T  27512407 tttcaaaag-taagaacgaaaccaaggaaaggttcttaacaaaagctaaagcttagttaagat-ttttgaagttgtatttcttg 27512326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 22776802 - 22776905
Alignment:
Q  156 attgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaa 250  Q
    ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  ||||||||    
T  22776802 attgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagttaag-gtttttgaa 22776899  T
Q  251 gttgta 256  Q
    ||||||    
T  22776900 gttgta 22776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 19716143 - 19716025
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagg-aaagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||| ||  |||||| |||||||||| ||||||||||||||||| ||| |||     || ||| |||||||||||||||||     
T  19716143 tttgaaaattgtgaagatgttgtaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaagttcttaacaaaacctaaagcttagttaaga- 19716046  T
Q  243 tttttgaagttgtatctcttg 263  Q
    ||||||||||||||| |||||    
T  19716045 tttttgaagttgtatttcttg 19716025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 20456925 - 20456968
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||    
T  20456925 gaaattatgaatgctaaatgatgcatgatatgcttatgcaaaaa 20456968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 18946917 - 18946963
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  18946917 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatag 18946963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 27071751 - 27071797
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  27071751 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatag 27071797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 20045665 - 20045720
Alignment:
Q  156 attgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||||    
T  20045665 attgtaaagacgttgcaattggttcccttt-caaaag-taagaacgaaaccaaggaaa 20045720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 27512542 - 27512506
Alignment:
Q  48 tgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||    
T  27512542 tgaatgcaaaatgatgtatgatatgcttatgcaaaaa 27512506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 99 - 263
Target Start/End: Original strand, 17680490 - 17680652
Alignment:
Q  99 aaggacttatcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    |||||||||||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||| ||||||||||||||||||    
T  17680490 aaggacttatcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggt-cctttttcaaaaggtaag 17680587  T
Q  198 aacgaaaccaaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  17680588 aacgaaaccaaggaaagagtacaaaagctaaagcttagttaaga-tttttgaagttgtatctcttg 17680652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 39843053 - 39843307
Alignment:
Q  9 gctggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaa-atgatgcatgataggcttatgcaaaaatagnnnnnnnnnn-gaaggactt 106  Q
    |||||||||||||||||||||||  |  || |||||||||||||||||| |||||||||||||   ||||||||||||             |||||||||    
T  39843053 gctggtagaaacaaaatatgagatacagactagaaactatgaatgcaaagatgatgcatgatatatttatgcaaaaatgtacaatttttttgaaggactt 39843152  T
Q  107 atcaaagtgaattgt-aaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaac 205  Q
    |||||||| |||| | |||||| |||||| ||||||| ||||||| ||| ||||| ||||  ||||||| ||  ||||||||||||||||||||||||||    
T  39843153 atcaaagttaatttttaaacatggtagagaaacatggtttcattt-gaaaattgtgaagatattgcaaaaggc-cctttttcaaaaggtaagaacgaaac 39843250  T
Q  206 caaggaaagagtacgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||    
T  39843251 caaggaaagagtacaaaaggtaaagcttagttaaga-tttttgaagttgtatctcttg 39843307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 6666261 - 6666095
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||| || |||||||||| |||||||||  |||   |||    
T  6666261 gaaggatttatcaaagtgaaatgtaaacattgtagaggaaaatggtttcattttaaacattgtaaggatgttgcaaacgattccttttttcaaa---aag 6666165  T
Q  198 aacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||||||||| |||     || ||||||||||||||||||||| |||||||| ||| ||||||||    
T  6666164 aacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaaga-tttttgaatttgcatctcttg 6666095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 263
Target Start/End: Original strand, 24709061 - 24709225
Alignment:
Q  102 gacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacg 201  Q
    ||||| ||||||| ||||||| |||||| |||||||||||| || |  ||||| ||||||||||  |||||| ||||||| |||||||||   |||||||    
T  24709061 gacttttcaaagtaaattgtagacattgcagaggaacatggtttta-attgaaaattgtaaagatattgcaatcggttcccttttcaaaaaacaagaacg 24709159  T
Q  202 aaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    || ||||||||  | |     || |||||||||||||||||||||  |||||||||||||| |||||    
T  24709160 aagccaaggaagaaattcttaacaaaagctaaagcttagttaaga-cttttgaagttgtatttcttg 24709225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 20736209 - 20736106
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| ||||||||| ||||||||||||||||||| || |||     || ||||||||||||||||||||||    
T  20736209 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagttaagat 20736110  T
Q  243 tttt 246  Q
    ||||    
T  20736109 tttt 20736106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 20741251 - 20741148
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| ||||||||| ||||||||||||||||||| || |||     || ||||||||||||||||||||||    
T  20741251 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttctaaacaaaagctaaagcttagttaagat 20741152  T
Q  243 tttt 246  Q
    ||||    
T  20741151 tttt 20741148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 20744767 - 20744664
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| ||||||||| ||||||||||||||||||| || |||     || ||||||||||||||||||||||    
T  20744767 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagttaagat 20744668  T
Q  243 tttt 246  Q
    ||||    
T  20744667 tttt 20744664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 6666341 - 6666280
Alignment:
Q  27 tgagacgcgtaccagaaactatgaatgcaaaatgatgcatgataggcttatgca-aaaatag 87  Q
    |||||| || || ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  6666341 tgagacacggactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaaatag 6666280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 17680396 - 17680473
Alignment:
Q  9 gctggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaa-atgatgcatgataggcttatgcaaaaat 85  Q
    |||||||||||||||||||||||  |  || |||||||||||||||||| |||||||||||||   ||||||||||||    
T  17680396 gctggtagaaacaaaatatgagatacaaactagaaactatgaatgcaaagatgatgcatgatatatttatgcaaaaat 17680473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 22160721 - 22160831
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  |    
T  22160721 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcataacaaaagctaaagcttagttaag-gt 22160818  T
Q  244 ttttgaagttgta 256  Q
    |||||||||||||    
T  22160819 ttttgaagttgta 22160831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 32002348 - 32002307
Alignment:
Q  46 tatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  32002348 tatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 32002307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 25856759 - 25856805
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  25856759 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatag 25856805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 25856869 - 25856930
Alignment:
Q  151 tgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||| ||||| |||| |||||||  |||||| |||||||||| ||||||||||||||||||||    
T  25856869 tgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaa 25856930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 9552601 - 9552770
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||  ||||||  |||| |||||||||||| ||||    
T  9552601 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatagtttca-tttgaaaattgtaaagatattgcaataggtt-ctttttcaaaagttaag 9552698  T
Q  198 aacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagat-tttttgaagttgtatctcttg 263  Q
    ||| |||||||||||| |||     || |||||||||||||||||||||| |||||||||||||||||||||    
T  9552699 aactaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaagatatttttgaagttgtatctcttg 9552770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 41000906 - 41000646
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn----gaaggactt 106  Q
    ||||||| |||||||||||||  | || ||||| |||||||||||||||||||||||||| ||||||||||||||||              |||||||||    
T  41000906 ggtagaagcaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttttttttgaaggactt 41000807  T
Q  107 atcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaacc 206  Q
    |||||||||||||||||||||||| ||||||||| | |||| |||||| ||||||||||  ||| ||  |||| |||||||||||| |||||||||||||    
T  41000806 atcaaagtgaattgtaaacattgtcgaggaacatagtttca-tttgaaaattgtaaagatattggaataggtt-ctttttcaaaagttaagaacgaaacc 41000709  T
Q  207 aaggaaagagt-----acgaaagctaaagcttagttaagattttt-tgaagttgtatctcttg 263  Q
    ||||||| | |     || |||||||| ||||||||||||||||| |||||||||||||||||    
T  41000708 aaggaaaaacttcttaacaaaagctaaggcttagttaagatttttatgaagttgtatctcttg 41000646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 41009688 - 41009428
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnn----gaaggactt 106  Q
    ||||||| |||||||||||||  | || ||||| |||||||||||||||||||||||||| ||||||||||||||||              |||||||||    
T  41009688 ggtagaagcaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagataattttttttttgaaggactt 41009589  T
Q  107 atcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaacc 206  Q
    |||||||||||||||||||||||| ||||||||| | |||| |||||| ||||||||||  ||| ||  |||| |||||||||||| |||||||||||||    
T  41009588 atcaaagtgaattgtaaacattgtcgaggaacatagtttca-tttgaaaattgtaaagatattggaataggtt-ctttttcaaaagttaagaacgaaacc 41009491  T
Q  207 aaggaaagagt-----acgaaagctaaagcttagttaagattttt-tgaagttgtatctcttg 263  Q
    ||||||| | |     || |||||||| ||||||||||||||||| |||||||||||||||||    
T  41009490 aaggaaaaacttcttaacaaaagctaaggcttagttaagatttttatgaagttgtatctcttg 41009428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 8203013 - 8203274
Alignment:
Q  16 gaaacaaaatatgagacgcgtaccagaaactatgaatgcaaaatgatgcatgataggcttatgcaaa-------aatagnnnnnnnnnngaaggacttat 108  Q
    ||||||||||||||||| |  || ||||||||||||||||||||||||||||||| |||||||||||       |||            |||||| |||     
T  8203013 gaaacaaaatatgagacacagactagaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatgtacaattttttttttatcgaaggatttac 8203112  T
Q  109 caaagtgaa-ttgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaacca 207  Q
    |||| | || || |||||||| || |||||||||| |||||||| || ||||||||||  ||||||  ||||| |||||||||||||||||| |||||||    
T  8203113 caaacttaatttataaacattttaaaggaacatggattcatttt-aaaattgtaaagatattgcaataggttcttttttcaaaaggtaagaatgaaacca 8203211  T
Q  208 aggaaagagt------acgaaagctaaagcttagttaagattttttgaagttgtatctcttga 264  Q
    |||||| |||       | ||||||||||||||||||||||||||||||||||||||||||||    
T  8203212 aggaaaaagttcttaatcaaaagctaaagcttagttaagattttttgaagttgtatctcttga 8203274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 25266126 - 25265956
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaaca 139  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||          ||||||||| | |||||||| ||||||||| | ||||||| |    
T  25266126 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag--atttttttgaaggacttgttaaagtgaaatgtaaacatggcagaggaata 25266029  T
Q  140 tggcttcattttgaacattgtaaaga-cgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaa 212  Q
    ||| |||| |||||| ||||| ||||   || |||  |||| ||||||||||||||||||||||||||||||||    
T  25266028 tggtttca-tttgaaaattgtcaagatatttacaataggtttctttttcaaaaggtaagaacgaaaccaaggaa 25265956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 17928433 - 17928180
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaa-ctatgaatgcaaaatgatgcatgataggcttatgcaaaaa--tagnnnnnnnnnngaaggacttat 108  Q
    |||||||||||||||||||||  | || ||||| |||||||||||||||||||||||||| |||||||||||||   |           |||||||||||    
T  17928433 ggtagaaacaaaatatgagacatggactagaaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaaggaatttttttttttgaaggacttat 17928334  T
Q  109 caaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaa 208  Q
    |||||      |||||||| | |||||||||||| |||| |||||| ||||||||||  ||||||   ||| | |||||| |||||||||||||||||||    
T  17928333 caaag------gtaaacatggcagaggaacatggtttca-tttgaaaattgtaaagatattgcaatatgtttccttttcacaaggtaagaacgaaaccaa 17928241  T
Q  209 gg--aaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    ||  ||| |||     |||||||| |||||||| |||||| ||||||||||| |||||||||    
T  17928240 ggaaaaaaagtacttaacgaaagcgaaagcttaattaaga-tttttgaagttctatctcttg 17928180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 263
Target Start/End: Complemental strand, 15623041 - 15622816
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag----nnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagagga 136  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||              ||||||||| ||||||| |||||||||| |||   ||||    
T  15623041 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacacatttttttttgaaggacttgtcaaagt-aattgtaaac-ttgataagga 15622944  T
Q  137 acatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagc 231  Q
    |||| | || | |||||| ||||| |||| |||||||  |||||| ||||||||| ||||||||||||||||||||| |||     || |||||||||||    
T  15622943 acattgtttta-tttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggaaa-agttcttaacaaaagctaaagc 15622847  T
Q  232 ttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||| ||||||||||||||| |||||    
T  15622846 ttagttaaga-tttttgaagttgtatttcttg 15622816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 6196889 - 6196772
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| |||     || ||||||||||||||||||||| |    
T  6196889 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaaga-t 6196792  T
Q  244 ttttgaagttgtatctcttg 263  Q
    |||||||||||||| |||||    
T  6196791 ttttgaagttgtatttcttg 6196772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 10720212 - 10720259
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10720212 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 10720259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 10720282 - 10720396
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||||||||||||    
T  10720282 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttcaaaaggtaa 10720380  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  10720381 gaacgaaaccaaggaa 10720396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 263
Target Start/End: Original strand, 3242908 - 3243063
Alignment:
Q  110 aaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaag 209  Q
    ||||| |||||||||||||| | |||||||||| || | |||||| ||||||||||  |||||| ||||||| ||||||||| | ||||| ||| |||||    
T  3242908 aaagttaattgtaaacattgcataggaacatggtttta-tttgaaaattgtaaagatattgcaatcggttccattttcaaaa-gcaagaaagaagccaag 3243005  T
Q  210 gaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||  |||     || ||||| ||||||||||||||| ||||||||||||||| |||||    
T  3243006 gaagaagttcttaacaaaagcaaaagcttagttaaga-tttttgaagttgtatttcttg 3243063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 8608652 - 8608541
Alignment:
Q  157 ttgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagattttttgaa 250  Q
    |||| |||| |||||||  |||||| |||||||||| |||||| ||||||||||| || |||     || ||||||||||||||||||||||||||||||    
T  8608652 ttgtgaagatgttgcaattggttcccttttcaaaag-taagaatgaaaccaaggataaaagttcttaacaaaagctaaagcttagttaagattttttgaa 8608554  T
Q  251 gttgtatctcttg 263  Q
    ||||||| |||||    
T  8608553 gttgtatttcttg 8608541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 14420777 - 14420658
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagg-aaagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| ||||| |  |||||| ||||||||| |||||||||||||||||| ||| |||     || |||||||||||||||||||||     
T  14420777 tttgaaaattgtgaagatgttgctattggttcccttttcaaaaagtaagaacgaaaccaaggaaaaaagttcttaacaaaagctaaagcttagttaaga- 14420679  T
Q  243 tttttgaagttgtatctcttg 263  Q
    ||||||||||||||| |||||    
T  14420678 tttttgaagttgtatttcttg 14420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 263
Target Start/End: Complemental strand, 70729 - 70507
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag-nnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaaca 139  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||           ||||||||| |||||||  ||||||||| |||   |||||||    
T  70729 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatagacacattttttgaaggacttgtcaaagt-cattgtaaac-ttgataaggaaca 70632  T
Q  140 tggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagctta 234  Q
    | | || | |||||| ||||| || | |||||||  |||||| ||||||||| ||||||||||||||||||||| |||     || |||||||||||||     
T  70631 ttgtttta-tttgaaaattgtgaaaatgttgcaattggttcccttttcaaaa-gtaagaacgaaaccaaggaaa-agttcttaacaaaagctaaagcttg 70535  T
Q  235 gttaagattttttgaagttgtatctcttg 263  Q
    ||||||| ||||||||||||||| |||||    
T  70534 gttaaga-tttttgaagttgtatttcttg 70507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 33568341 - 33568231
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  |    
T  33568341 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagttaag-gt 33568244  T
Q  244 ttttgaagttgta 256  Q
    |||||||||||||    
T  33568243 ttttgaagttgta 33568231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 11183903 - 11183806
Alignment:
Q  168 ttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctctt 262  Q
    ||||||| |||| | | |||||||| |||||||||||||||||||| |||     || |||||||||||||||||||||| |||||||||||||| ||||    
T  11183903 ttgcaaatggttacctcttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaagat-ttttgaagttgtatttctt 11183806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 12477128 - 12477227
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagtac----gaaagctaaagcttagttaagattt 244  Q
    |||||| ||||| |||| | |||||  |||||| |||||||||| ||||||||| |||||||||| ||| |    |||||||||||||||||||||||||    
T  12477128 tttgaaaattgtgaagatgctgcaattggttcccttttcaaaag-taagaacgagaccaaggaaaaagttcttaagaaagctaaagcttagttaagattt 12477226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 12477020 - 12477066
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  12477020 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 12477066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 14885303 - 14885349
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  14885303 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 14885349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 14885413 - 14885475
Alignment:
Q  150 ttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||| ||||| |||| |||||||  |||||||||| ||||| |||||||||||||||||||||    
T  14885413 ttgaaaattgtgaagatgttgcaattggttcctttt-caaaaagtaagaacgaaaccaaggaaa 14885475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 8806932 - 8806886
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||  | ||||||||||||||||    
T  8806932 gaaattatgaatgcaaaatgatgcatgtcatgcttatgcaaaaatag 8806886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 15682664 - 15682694
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgata 70  Q
    |||||||||||||||||||||||||||||||    
T  15682664 agaaactatgaatgcaaaatgatgcatgata 15682694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 8618929 - 8618874
Alignment:
Q  156 attgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||||    
T  8618929 attgtaaagacgttgcaattggttcccttt-caaaag-taagaacgaaaccaaggaaa 8618874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 14420888 - 14420843
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaata 86  Q
    |||| |||||||| ||||||||||||| || |||||||||||||||    
T  14420888 gaaattatgaatgaaaaatgatgcatgctatgcttatgcaaaaata 14420843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 20438521 - 20438484
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  20438521 aatgcaagatgatgcatgatatgcttatgcaaaaatag 20438484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 23285626 - 23285671
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaata 86  Q
    |||| |||| ||||||||||||||||| || |||||||||||||||    
T  23285626 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaata 23285671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 41435686 - 41435649
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  41435686 aatgcaagatgatgcatgatatgcttatgcaaaaatag 41435649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 23285736 - 23285799
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||| |||||||||||||    
T  23285736 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaatgaaaccaaggaaa 23285799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 46398287 - 46398341
Alignment:
Q  157 ttgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||||    
T  46398287 ttgtaaagacgttgcaattggttcccttt-caaaag-taagaacgaaaccaaggaaa 46398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 74082 - 74345
Alignment:
Q  12 ggtagaaacaaaatatgagacgcgtaccagaaactatgaatgcaaa-atgatgcatgataggcttatgcaaaaatagnnnnnnnnnn--------gaagg 102  Q
    ||||||||||||||| ||||| || || |||||||||||||||||| ||||||||||||| |||||||||||||| |                  |||||    
T  74082 ggtagaaacaaaatacgagacacggactagaaactatgaatgcaaagatgatgcatgatatgcttatgcaaaaatggacaaatttttttttttatgaagg 74181  T
Q  103 acttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacga 202  Q
    ||||||||||||||||||||||||| | | |||||||||| ||||||| ||| ||||||||||  ||||||  |||||||||||||||||||||||||||    
T  74182 acttatcaaagtgaattgtaaacatggcaaaggaacatggtttcattt-gaaaattgtaaagatattgcaataggttcctttttcaaaaggtaagaacga 74280  T
Q  203 aaccaaggaaagagt-----acgaaagctaaagcttagttaagattttttgaagttgtatctcttg 263  Q
    |||| |  |||  ||     || ||||||||||||||||||||| |||||||||||||||||||||    
T  74281 aaccgaaaaaaaggttcttaacaaaagctaaagcttagttaaga-tttttgaagttgtatctcttg 74345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 2300 - 2073
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatagnnnnnnnnnng--aaggacttatcaaagtgaattgtaaacattgtagaggaa 137  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||             |||||||| |||||||||| ||||||||  |||||||||    
T  2300 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacaatttttttttaaggacttgtcaaagtgaaatgtaaacacagtagaggaa 2201  T
Q  138 catggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagct 232  Q
    ||||| ||||||| ||| ||| ||||||  ||||||  ||||||||||||||||||||||||| ||||||| ||||||||     || | || |||| ||    
T  2200 catggtttcattt-gaaaattttaaagatattgcaataggttcctttttcaaaaggtaagaacaaaaccaacgaaagagttcttaacaacagttaaaact 2102  T
Q  233 tagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||  ||||||||||||||||||||    
T  2101 tagttaaga--ttttgaagttgtatctcttg 2073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 3968 - 3850
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaag-agt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| ||||||||||||||||||||| |||     || |||||||||||||||||||||     
T  3968 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaagaagttcttaacaaaagctaaagcttagttaaga- 3871  T
Q  243 tttttgaagttgtatctcttg 263  Q
    ||||||||||||||| |||||    
T  3870 tttttgaagttgtatttcttg 3850  T

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Target: scaffold2162 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold2162
Description:

Target: scaffold2162; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 499 - 452
Alignment:
Q  40 agaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  499 agaaactatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 452  T

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Target: scaffold2162; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 407 - 293
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttg-caaacggttcctttttcaaaaggtaa 196  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| ||| ||||| ||||  ||  |||  |||| ||||||| ||||||||    
T  407 gaaggacttgttaaagtgaaatgtaaacatggcagaggaacatggtttcattt-gaaaattgtcaagatatttacaataggtttctttttccaaaggtaa 309  T
Q  197 gaacgaaaccaaggaa 212  Q
    ||||||||||||||||    
T  308 gaacgaaaccaaggaa 293  T

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Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 25380 - 25498
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt------acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |      || |||||||||||||||||||||     
T  25380 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaatttcttaacaaaagctaaagcttagttaaga- 25477  T
Q  243 tttttgaagttgtatctcttg 263  Q
    ||||||||||||||| |||||    
T  25478 tttttgaagttgtatttcttg 25498  T

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Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 10630 - 10516
Alignment:
Q  152 gaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttt 246  Q
    ||||||||| |||| |||| ||  |||||| ||||||||| ||||||||||||||||||||| |||     || |||| |||||||||||||||| ||||    
T  10630 gaacattgttaagatgttgtaattggttcccttttcaaaaagtaagaacgaaaccaaggaaa-agttcttaacaaaaggtaaagcttagttaaga-tttt 10533  T
Q  247 tgaagttgtatctcttg 263  Q
    ||||||||||| |||||    
T  10532 tgaagttgtatttcttg 10516  T

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Target: scaffold0357 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 8804 - 8701
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagga-aagagt-----acgaaagctaaagcttagttaagat 242  Q
    |||||| ||||| |||| |||||||  |||||| ||||||||| ||||||||||||||||||| || |||     || ||||||||||||||||||||||    
T  8804 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaaagtaagaacgaaaccaaggataaaagttcttaacaaaagctaaagcttagttaagat 8705  T
Q  243 tttt 246  Q
    ||||    
T  8704 tttt 8701  T

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Target: scaffold0357; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 8915 - 8869
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||    
T  8915 gaaattatgaatgcaaaatgatgcatgctatgcttatgcaaaaatag 8869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 263
Target Start/End: Original strand, 37076 - 37303
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag---nnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaa 137  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||             ||||||||| ||||||| ||||||| || |  || |||||    
T  37076 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatagacattttttatttgaaggacttgtcaaagt-aattgtagacttgataaaggaa 37174  T
Q  138 catggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaagg-aaagagt-----acgaaagctaaagc 231  Q
    ||| | || | ||||||  |||| |||| |||||||   ||||| ||||||||| |||||||||||||||||| ||| |||     || |||||||||||    
T  37175 cattgtttta-tttgaaatttgtgaagatgttgcaattagttcccttttcaaaa-gtaagaacgaaaccaaggaaaaaagttcttaacaaaagctaaagc 37272  T
Q  232 ttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||| ||||||||||||||| |||||    
T  37273 ttagttaaga-tttttgaagttgtatttcttg 37303  T

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Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 192297 - 192414
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||   ||||| |||||||||| |||||||||||||||||||| |||     || ||||||||||||||||||||| |    
T  192297 tttgaaaattgtgaagatgttgcaatttgttcccttttcaaaag-taagaacgaaaccaaggaaaaagttcttaacaaaagctaaagcttagttaaga-t 192394  T
Q  244 ttttgaagttgtatctcttg 263  Q
    ||||||||||| || |||||    
T  192395 ttttgaagttgcatttcttg 192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 4929 - 4975
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  4929 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 4975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 11043 - 11089
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11043 gaaattatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 11089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 4881 - 5032
Alignment:
Q  98 gaaggacttatcaaagtgaattgtaaacattgtagaggaacatggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaag 197  Q
    |||||| || ||||||| ||||| ||||||| |||||||| |||| ||||||| |||  ||||||| |  |||| |  |||||||||||  ||| |||||    
T  4881 gaaggatttgtcaaagt-aattggaaacattatagaggaatatggtttcattt-gaaagttgtaaatatattgcgataggttccttttttcaaaagtaag 4978  T
Q  198 aacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagattttt 246  Q
    |||||||||||||||| |||     || ||| ||||||||||||||||||||||    
T  4979 aacgaaaccaaggaaaaagttcttaacaaaacctaaagcttagttaagattttt 5032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 2 - 43
Alignment:
Q  46 tatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  2 tatgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 14277 - 14317
Alignment:
Q  47 atgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  14277 atgaatgcaaaatgatgcatgatatgcttatgcaaaaatag 14317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 18122 - 18012
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt-----acgaaagctaaagcttagttaagatt 243  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| |||||||||||||||||||| | |     || ||||||||||||||||||||  |    
T  18122 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaaaaattcttaacaaaagctaaagcttagttaag-gt 18025  T
Q  244 ttttgaagttgta 256  Q
    |||||||||||||    
T  18024 ttttgaagttgta 18012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 263
Target Start/End: Complemental strand, 31463 - 31237
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag---nnnnnnnnnngaaggacttatcaaagtgaattgtaaacattgtagaggaa 137  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||             ||||||||| ||||||| |||||||||| |||   |||||    
T  31463 gaaattatgaatgtaaaatgatgcatgatatgcttatgcaaaaatagacacattttttttgaaggacttgtcaaagt-aattgtaaac-ttgataaggaa 31366  T
Q  138 catggcttcattttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaagagt------acgaaagctaaagc 231  Q
    ||| | || | |||||| ||||| |||| |||||||  |||||| ||||||||| || |||||||||||||||||| |||      || |||| | ||||    
T  31365 cattgtttta-tttgaaaattgtgaagatgttgcaattggttcccttttcaaaa-gtgagaacgaaaccaaggaaaaagttctttaacaaaagttgaagc 31268  T
Q  232 ttagttaagattttttgaagttgtatctcttg 263  Q
    |||||||||| ||||||||||||||| |||||    
T  31267 ttagttaaga-tttttgaagttgtatttcttg 31237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 96 - 159
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||||| ||||| |||| |||||||  |||||| |||||||||| ||||||||||||||||||||    
T  96 tttgaaaattgtgaagatgttgcaattggttcccttttcaaaag-taagaacgaaaccaaggaaa 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 17105 - 17062
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||| |||||||||||||||||| |||||| |||||||||||||    
T  17105 gaaattatgaatgcaaaatgatgtatgatatgcttatgcaaaaa 17062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 3839 - 3885
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  3839 gaaattatgtatgcaaaatgatgcatgctatgcttatgcaaaaatag 3885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 3947 - 4010
Alignment:
Q  149 tttgaacattgtaaagacgttgcaaacggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    |||||| ||||| |||| |||||||  |||| | |||||||||| ||||||||||||||||||||    
T  3947 tttgaaaattgtgaagatgttgcaattggtttccttttcaaaag-taagaacgaaaccaaggaaa 4010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 18481 - 18527
Alignment:
Q  41 gaaactatgaatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    |||| ||||||| |||||||||||||| || ||||||||||||||||    
T  18481 gaaattatgaatacaaaatgatgcatgttatgcttatgcaaaaatag 18527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0782 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0782
Description:

Target: scaffold0782; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 5938 - 5901
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  5938 aatgcaagatgatgcatgatatgcttatgcaaaaatag 5901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 9622 - 9585
Alignment:
Q  47 atgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    ||||||||||||||||||||| || |||||||||||||    
T  9622 atgaatgcaaaatgatgcatgttatgcttatgcaaaaa 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 22886 - 22922
Alignment:
Q  176 ggttcctttttcaaaaggtaagaacgaaaccaaggaaa 213  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22886 ggttcctttttcaaaag-taagaacgaaaccaaggaaa 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 22743 - 22779
Alignment:
Q  48 tgaatgcaaaatgatgcatgataggcttatgcaaaaa 84  Q
    |||||||||||||||| |||||| |||||||||||||    
T  22743 tgaatgcaaaatgatgtatgatatgcttatgcaaaaa 22779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 184177 - 184214
Alignment:
Q  50 aatgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  184177 aatgcaagatgatgcatgatatgcttatgcaaaaatag 184214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 1580 - 1625
Alignment:
Q  41 gaaactatgaa-tgcaaaatgatgcatgataggcttatgcaaaaatag 87  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  1580 gaaactatgaaatgcaaaatgatgcatgat--gcttatgcaaaaatag 1625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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