View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_226 (Length: 263)
Name: NF9985A_low_226
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_226 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 52763360 - 52763617
Alignment:
| Q |
1 |
tcgaagaatattaaaaaagggtagttggtaatggactcaaaacatttgtatgaacaaatcctttattagttagtattcctcttagagataggtttaagca |
100 |
Q |
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| T |
52763360 |
tcgaagaaaattaaaaaagggtagttggtaatggactcaaatcatctgtatgaacaaatcctttattaggtagtattcctcttagagataggtttaagca |
52763459 |
T |
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| Q |
101 |
gttgtttgagttggctgaaaatcgttggattttggcggcggagatgttttctttannnnnnnnnnnnnnnnnnnnnnnnntatgaaggcataaaagtggc |
200 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
52763460 |
gttgtttgaattggctgaaaatcgttggattttagcggcggagatgttttatttagggtgggtgggggtgggggtggggttatgaaggcataaaagtggc |
52763559 |
T |
|
| Q |
201 |
ggtggaggctgttactttgcatgttgatattgaagaccattgacgatgacaactagat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52763560 |
ggtggaggctgttactttgcatgttgatattgaagaccattgacgatgacaactagat |
52763617 |
T |
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