View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_227 (Length: 262)
Name: NF9985A_low_227
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_227 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 22015137 - 22015361
Alignment:
| Q |
17 |
gacatcaacatggtaagatagctctatcatgaagataaataatccagtaaaacgaaaccgtctgataagcacagatcgaactattcttttgccttttact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22015137 |
gacatcaacatggtaagatagctctatcatgaagataaacaatccagtaaaacgaaaccgtctgataagcacagatcgaactattcttttgccttttact |
22015236 |
T |
|
| Q |
117 |
nnnnnnngaaagatgataatccagaaaaacattaactgaataaaactatgtggatagctaaaaggaaaaaacatacaattggaccaggtgcattagcctg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22015237 |
aaaaaaagaaagatgataatccagaaaaacattaactgaataaaactatgtggatagctaaaaggaaaaaacatacaattggatcaggtgcattagcctg |
22015336 |
T |
|
| Q |
217 |
ctggcacataatccagggaacacct |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22015337 |
ctggcacataatccagggaacacct |
22015361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 49588253 - 49588209
Alignment:
| Q |
72 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
116 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
49588253 |
aaccgtgtgataagcacaaagcgaactattctttcgccttttact |
49588209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 33891597 - 33891641
Alignment:
| Q |
72 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
116 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
33891597 |
aaccgtgtgataagcacatagcgaactattctttcgccttttact |
33891641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 5900530 - 5900574
Alignment:
| Q |
72 |
aaccgtctgataagcacagatcgaactattcttttgccttttact |
116 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
5900530 |
aaccgtgtgataagcacaaagcgaactattctttcgccttttact |
5900574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University