View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_235 (Length: 259)
Name: NF9985A_low_235
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_235 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 39695097 - 39695349
Alignment:
| Q |
7 |
tcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
106 |
Q |
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| T |
39695097 |
tcaagtatattcttagcaactccaatagcaatccaaagttgcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
39695196 |
T |
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| Q |
107 |
cagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
206 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695197 |
cagctagttctgtttctgttatagtcttgatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
39695296 |
T |
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| Q |
207 |
aatgcctatgccgctccaacgaataggagtaggacatgtgttgaatattcttg |
259 |
Q |
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| T |
39695297 |
aatgcctatgccgctccaacgaataggagcaggacatgtgttgactgttcttg |
39695349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 39935018 - 39934766
Alignment:
| Q |
7 |
tcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
106 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
39935018 |
tcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcc |
39934919 |
T |
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| Q |
107 |
cagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
206 |
Q |
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| T |
39934918 |
cagctagttttgtttctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggcaa |
39934819 |
T |
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| Q |
207 |
aatgcctatgccgctccaacgaataggagtaggacatgtgttgaatattcttg |
259 |
Q |
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| T |
39934818 |
atcacttatgccgctccagcgaataggagcaggacatgtgttgactgttcttg |
39934766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 39704009 - 39704261
Alignment:
| Q |
7 |
tcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||| ||||| | |
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| T |
39704009 |
tcaagtatattcttagcaactccaatagcaatccaaagtagtgtgacggtacttcaagctttagccatggatcgctcattaggaccccatttcaaaattc |
39704108 |
T |
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| Q |
107 |
cagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
206 |
Q |
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||||| |||||||||||||||| ||| |||||||| || ||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||| | || |
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| T |
39704109 |
cagctggttctgtttctgttatagtcataatatcaacatccattttcctcacctttcttgacagagtgctattgccatgttggcataagattactggaaa |
39704208 |
T |
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| Q |
207 |
aatgcctatgccgctccaacgaataggagtaggacatgtgttgaatattcttg |
259 |
Q |
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|| ||||||||| || |||||||||||||||||||||||||||| | |||||| |
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| T |
39704209 |
aacgcctatgccacttcaacgaataggagtaggacatgtgttgactgttcttg |
39704261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 39929317 - 39929114
Alignment:
| Q |
56 |
tacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcct |
155 |
Q |
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| T |
39929317 |
tacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct |
39929218 |
T |
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| Q |
156 |
cacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacgaataggagtaggacatgtgttgaatatt |
255 |
Q |
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||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||| |||| || |||||| | ||||||||||||||||||||| ||| || |
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| T |
39929217 |
cacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctccatcaaataggagtaggacatgtgttcaatgtt |
39929118 |
T |
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| Q |
256 |
cttg |
259 |
Q |
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|||| |
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| T |
39929117 |
cttg |
39929114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 38062001 - 38061800
Alignment:
| Q |
53 |
ttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatt---gtcttaatatcagcacccat |
149 |
Q |
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|||||||||||| |||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||| || ||||||||| || | || |
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| T |
38062001 |
ttgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattatagtgttaatatcaacatctat |
38061902 |
T |
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| Q |
150 |
tttcctcacatttcttgacagagtgctattaccaggttggcataaggttacc-aggaaaatgcctatgccgctccaacgaataggagtaggacatgtgtt |
248 |
Q |
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||||||||| ||||||||||||||| |||| ||||||||| ||| | | ||| | |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
38061901 |
tttcctcacctttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctccaacgaataggagtaggctatgtgtt |
38061802 |
T |
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| Q |
249 |
ga |
250 |
Q |
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|| |
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| T |
38061801 |
ga |
38061800 |
T |
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