View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_239 (Length: 258)

Name: NF9985A_low_239
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_239
NF9985A_low_239
[»] chr4 (9 HSPs)
chr4 (77-258)||(21154738-21154913)
chr4 (29-67)||(27043740-27043778)
chr4 (32-67)||(21953395-21953430)
chr4 (34-67)||(7297661-7297694)
chr4 (38-67)||(10172184-10172213)
chr4 (36-65)||(24161114-24161143)
chr4 (32-65)||(53315450-53315483)
chr4 (29-65)||(42403933-42403969)
chr4 (32-64)||(54726534-54726566)
[»] chr5 (4 HSPs)
chr5 (30-67)||(14331488-14331525)
chr5 (29-67)||(42646792-42646830)
chr5 (30-67)||(35299887-35299924)
chr5 (38-71)||(36796626-36796659)
[»] chr3 (7 HSPs)
chr3 (32-65)||(25459543-25459576)
chr3 (32-67)||(902045-902080)
chr3 (32-66)||(2100092-2100126)
chr3 (37-71)||(16072959-16072993)
chr3 (29-67)||(33120258-33120296)
chr3 (30-67)||(4534286-4534323)
chr3 (37-69)||(53493843-53493875)
[»] chr7 (5 HSPs)
chr7 (29-64)||(37497738-37497773)
chr7 (29-67)||(529484-529522)
chr7 (32-66)||(28340990-28341024)
chr7 (29-67)||(37064378-37064416)
chr7 (30-67)||(33266397-33266434)
[»] chr1 (5 HSPs)
chr1 (32-71)||(36495404-36495443)
chr1 (29-62)||(3887542-3887575)
chr1 (38-67)||(26679476-26679505)
chr1 (34-71)||(33976296-33976333)
chr1 (30-67)||(34952324-34952361)
[»] chr8 (3 HSPs)
chr8 (33-67)||(40357050-40357084)
chr8 (30-66)||(12496983-12497019)
chr8 (33-69)||(14905724-14905760)
[»] chr6 (5 HSPs)
chr6 (32-70)||(9911796-9911834)
chr6 (34-67)||(10016745-10016778)
chr6 (38-67)||(19800376-19800405)
chr6 (38-67)||(33027714-33027743)
chr6 (32-64)||(21405067-21405099)
[»] chr2 (4 HSPs)
chr2 (37-67)||(3070136-3070166)
chr2 (30-67)||(750856-750893)
chr2 (34-67)||(18179071-18179104)
chr2 (29-65)||(423613-423649)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 21154738 - 21154913
Alignment:
Q  77 taatctgactcttttcttttgaataggaccccaactctaagcaccatggaactacaatatgggatgcatcacttgtatttgcaaagtttcttgtaagtta 176  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  21154738 taatctgactcttttgttttgaataggaccccaactctaagcaccatggaactacaatatgggatgcatcacttgtatttgcaaagtttcttgt------ 21154831  T
Q  177 aagttgtctatcttcgtcaaatgctctcgtcattttttcatgaattagattgttagatcttaagttgtttttctttagatga 258  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21154832 aagttgtctatcttcgttaaatgctctggtcattttttcatgaattagattgttagatcttaagttgtttttctttagatga 21154913  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 27043740 - 27043778
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  27043740 ttaagggtctgtttggattgacttatttgagcttatcta 27043778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 21953430 - 21953395
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||||||||||||||| |||||||||||||||||    
T  21953430 agggtctgtttggattgacttatttgagcttatcta 21953395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 7297694 - 7297661
Alignment:
Q  34 ggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||||||||||||||||||||||| |||||||    
T  7297694 ggtctgtttggattgatttatttgagtttatcta 7297661  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 10172213 - 10172184
Alignment:
Q  38 tgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||||||||||||    
T  10172213 tgtttggattgatttatttgagcttatcta 10172184  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 24161143 - 24161114
Alignment:
Q  36 tctgtttggattgatttatttgagcttatc 65  Q
    ||||||||||||||||||||||||||||||    
T  24161143 tctgtttggattgatttatttgagcttatc 24161114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 53315483 - 53315450
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatc 65  Q
    |||||||||||||||||| |||||||||||||||    
T  53315483 agggtctgtttggattgacttatttgagcttatc 53315450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 42403933 - 42403969
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatc 65  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  42403933 ttaagggcctgtttggattgacttatttgagcttatc 42403969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 54726534 - 54726566
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttat 64  Q
    |||| ||||||||||||||||||||||||||||    
T  54726534 agggcctgtttggattgatttatttgagcttat 54726566  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 14331525 - 14331488
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14331525 taagggtctgtttggattgacttatttgagcttatcta 14331488  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 42646830 - 42646792
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  42646830 ttaagggtctgtttggattgacttacttgagcttatcta 42646792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 35299924 - 35299887
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  35299924 taagggcctgtttggattgacttatttgagcttatcta 35299887  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 36796626 - 36796659
Alignment:
Q  38 tgtttggattgatttatttgagcttatctaatga 71  Q
    |||||||||||| |||||||||||||||||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatga 36796659  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 25459543 - 25459576
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatc 65  Q
    ||||||||||||||||||||||||||||||||||    
T  25459543 agggtctgtttggattgatttatttgagcttatc 25459576  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 902080 - 902045
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||| ||||||||||||||||||    
T  902080 agggtctgtttggattgctttatttgagcttatcta 902045  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 2100092 - 2100126
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatct 66  Q
    |||||||||||||||||| ||||||||||||||||    
T  2100092 agggtctgtttggattgacttatttgagcttatct 2100126  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 16072959 - 16072993
Alignment:
Q  37 ctgtttggattgatttatttgagcttatctaatga 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  16072959 ctgtttggattgacttatttgagcttatctaatga 16072993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 33120296 - 33120258
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatcta 67  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  33120296 ttaaaggtctgtttgggttgatttatttgagcttatcta 33120258  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 4534286 - 4534323
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  4534286 taagggcctgtttcgattgatttatttgagcttatcta 4534323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 53493843 - 53493875
Alignment:
Q  37 ctgtttggattgatttatttgagcttatctaat 69  Q
    |||||||||||||||| ||||||||||||||||    
T  53493843 ctgtttggattgatttgtttgagcttatctaat 53493875  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 37497738 - 37497773
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttat 64  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37497738 ttaagggtctgtttgtattgatttatttgagcttat 37497773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 529522 - 529484
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  529522 ttaagggtctgattggattgacttatttgagcttatcta 529484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 28340990 - 28341024
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatct 66  Q
    |||||||||||||||||| ||||||||||||||||    
T  28340990 agggtctgtttggattgacttatttgagcttatct 28341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 37064378 - 37064416
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  37064378 ttaagggtctgtttggattgacttatttgatcttatcta 37064416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 33266397 - 33266434
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  33266397 taagggtatgtttggattgacttatttgagcttatcta 33266434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 36495404 - 36495443
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatctaatga 71  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  36495404 agggtctgtttggattggtttatttgagcttatataatga 36495443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 3887542 - 3887575
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagctt 62  Q
    ||||||||||||||||||||| ||||||||||||    
T  3887542 ttaagggtctgtttggattgacttatttgagctt 3887575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 26679505 - 26679476
Alignment:
Q  38 tgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||||||||||||    
T  26679505 tgtttggattgatttatttgagcttatcta 26679476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 33976333 - 33976296
Alignment:
Q  34 ggtctgtttggattgatttatttgagcttatctaatga 71  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  33976333 ggtctgtttggattgacttatttgagcttatttaatga 33976296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 34952361 - 34952324
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||||||||||||||||  |||||||||||||||||    
T  34952361 taagggtctgtttggattggcttatttgagcttatcta 34952324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 40357084 - 40357050
Alignment:
Q  33 gggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||||||||| |||||||    
T  40357084 gggtctgtttggattgatttatttgagtttatcta 40357050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 12496983 - 12497019
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatct 66  Q
    |||||| || |||||||||||||||||||||||||||    
T  12496983 taagggcctatttggattgatttatttgagcttatct 12497019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 14905760 - 14905724
Alignment:
Q  33 gggtctgtttggattgatttatttgagcttatctaat 69  Q
    |||||||||||||| | ||||||||||||||||||||    
T  14905760 gggtctgtttggatcggtttatttgagcttatctaat 14905724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 9911796 - 9911834
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttatctaatg 70  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  9911796 agggtttgtttggattgatttatttgagtttatctaatg 9911834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 10016778 - 10016745
Alignment:
Q  34 ggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  10016778 ggtctgtttggattggtttatttgagcttatcta 10016745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 19800376 - 19800405
Alignment:
Q  38 tgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||||||||||||    
T  19800376 tgtttggattgatttatttgagcttatcta 19800405  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 33027743 - 33027714
Alignment:
Q  38 tgtttggattgatttatttgagcttatcta 67  Q
    ||||||||||||||||||||||||||||||    
T  33027743 tgtttggattgatttatttgagcttatcta 33027714  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 21405067 - 21405099
Alignment:
Q  32 agggtctgtttggattgatttatttgagcttat 64  Q
    |||||||||||||||||| ||||||||||||||    
T  21405067 agggtctgtttggattgacttatttgagcttat 21405099  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 3070136 - 3070166
Alignment:
Q  37 ctgtttggattgatttatttgagcttatcta 67  Q
    |||||||||||||||||||||||||||||||    
T  3070136 ctgtttggattgatttatttgagcttatcta 3070166  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 750893 - 750856
Alignment:
Q  30 taagggtctgtttggattgatttatttgagcttatcta 67  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  750893 taaggctctgtttggattgacttatttgagcttatcta 750856  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 18179104 - 18179071
Alignment:
Q  34 ggtctgtttggattgatttatttgagcttatcta 67  Q
    |||||||||||||||| |||||||||||||||||    
T  18179104 ggtctgtttggattgacttatttgagcttatcta 18179071  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 423613 - 423649
Alignment:
Q  29 ttaagggtctgtttggattgatttatttgagcttatc 65  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  423613 ttaagggtctgtttggtttggtttatttgagcttatc 423649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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