View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_24 (Length: 433)
Name: NF9985A_low_24
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 425
Target Start/End: Original strand, 37507756 - 37508175
Alignment:
| Q |
6 |
aagtaagtcaactatgtgttcataaatcattatgtgagtcccgcaaaaattttagagcacacaagttttttagagtgcattgtttgtatttttcttaaaa |
105 |
Q |
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| T |
37507756 |
aagtaagtcaactatgtgttgataaatcattatgtgagtcccacaaaaattttagagcgcacaagttttttagagtgcattgtttgtatttttcttaaaa |
37507855 |
T |
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| Q |
106 |
gtgtttcatccaaacatgccacagattagttggtctattgcactcttgttactcactaaataaaatttaaacatccacaataaaaaagagacaaagtaaa |
205 |
Q |
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| T |
37507856 |
gtgtttcatccaaacatgccacagattagttggtctattgcactcttgttactcactaaataaaatttaaacatccacaataaaaaagagacaaagtaaa |
37507955 |
T |
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| Q |
206 |
atattattttatcaagagaagtattaatcttttgagggaagagacggggaaaactagtttcccacgtacgatttcactgatatgttttgatcacaagagc |
305 |
Q |
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| T |
37507956 |
atattattttattaagagaagtattaatcttttgagggaagagacggggaaaactagtttcccacgtacgatttcactgatatgttttgatcacaagaac |
37508055 |
T |
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| Q |
306 |
aacgtccgacgaggaacaacaatgttgatggcaagttgggaatacctgcaagcactttacactcaagccagtaagtgagcaaagactcggaggtttttag |
405 |
Q |
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| T |
37508056 |
aacgtccgacgaggaacaacaatgttgatggcaagttgggaatacctgcaagcactttactctcaagccagtaagtgagcaaagactgggaggtttttag |
37508155 |
T |
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| Q |
406 |
gatagagaatgtgaacacca |
425 |
Q |
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| T |
37508156 |
gatagagaatgtgaacacca |
37508175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 37848377 - 37848265
Alignment:
| Q |
110 |
ttcatccaaacatgccacagattagttggtctattgcactcttgttactcactaaataaaatttaaacatccacaataaaaaa-gagacaaagtaaaata |
208 |
Q |
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||||||||| || ||||| ||||||||| || | ||| |||||||| |||||| ||||||||||| | ||| || ||||||| |||||||||||||||| |
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| T |
37848377 |
ttcatccaattataccacaaattagttggcctttggcattcttgttattcactacataaaatttaaccttccccagtaaaaaaagagacaaagtaaaata |
37848278 |
T |
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| Q |
209 |
ttattttatcaag |
221 |
Q |
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| T |
37848277 |
ttattttatcaag |
37848265 |
T |
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