View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_240 (Length: 258)
Name: NF9985A_low_240
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_240 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 8705415 - 8705652
Alignment:
| Q |
9 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatt |
108 |
Q |
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| T |
8705415 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaataaaggctttaaatgagtttatt |
8705514 |
T |
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| Q |
109 |
tgagtttctatttattcatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgttccgtaatttgatgtt |
208 |
Q |
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| T |
8705515 |
tgagtttttatttatttatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgttctgtaatttgatgtt |
8705614 |
T |
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| Q |
209 |
tattggattcattgtttgaaattttgaactttgaaccc |
246 |
Q |
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| T |
8705615 |
tattggattcattgtttgaaattttgaactttgaaccc |
8705652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 14372312 - 14372181
Alignment:
| Q |
9 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatt |
108 |
Q |
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| T |
14372312 |
tggtgttaaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaataaaggttttaaatgagtttatt |
14372214 |
T |
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| Q |
109 |
tgagtttctatttattcatttaaatgagtatga |
141 |
Q |
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| T |
14372213 |
tgagttattatttatttatttaaatgagtatga |
14372181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 8691135 - 8691210
Alignment:
| Q |
9 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttaca |
84 |
Q |
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|||||||||||||| |||||||||||||||||||||| | |||||||| | ||| || ||||||||||||||||| |
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| T |
8691135 |
tggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
8691210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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