View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_241 (Length: 257)
Name: NF9985A_low_241
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_241 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 29669076 - 29668834
Alignment:
| Q |
15 |
ctcaagaacagtggttaactccttgattattttctcctcaacttttggatggttcatgaccagccagaagaaccagctgagagcaactgatgacgtgtcc |
114 |
Q |
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| T |
29669076 |
ctcaagaacagtggttaactccttgattattttctcctcaactttcggatggttcatgaccagccagaagaaccagctgagagcaactgatgacgtgtcc |
29668977 |
T |
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| Q |
115 |
cttccagcaaggatgaagtttaagatgatgtgttgtagaatcgtggcgttgattggctttccgtctatgtctcgtttcttcatgaaacgtgacattaagt |
214 |
Q |
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| T |
29668976 |
cttccagcaaggatgaagtttaagatgatgtgttgtagaatcgtggcgttgattggctttccgtctatgtctcgtttcttcatgaaacgtgacattaagt |
29668877 |
T |
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| Q |
215 |
cgtcagaaggggtttccttacgatctgaaatggcgttgttcat |
257 |
Q |
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| T |
29668876 |
catcagaaggggtttccttacgatctgaaatggcgttgttcat |
29668834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 11315194 - 11315133
Alignment:
| Q |
73 |
accagccagaagaaccagctgagagcaactgatgacgtgtcccttccagcaaggatgaagtt |
134 |
Q |
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| T |
11315194 |
accaaccaaaagaaccagctcaacgcaactgatgacgtgtcacgtccagctaggatgaagtt |
11315133 |
T |
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