View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_246 (Length: 256)
Name: NF9985A_low_246
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_246 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 7089788 - 7090017
Alignment:
| Q |
18 |
gacatcaaatcaaatacataaataaagtgaaaagnnnnnnnnttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089788 |
gacatcaaatcaaatacataaataaagtgaaaa---aaaaaattacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcac |
7089884 |
T |
|
| Q |
118 |
aacgccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttga |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089885 |
aacaccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttga |
7089984 |
T |
|
| Q |
218 |
attatgtctaatagtaactcgggaggtaaatta |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7089985 |
attatgtctaatagtaactcgggaggtaaatta |
7090017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 60 - 246
Target Start/End: Original strand, 7669653 - 7669839
Alignment:
| Q |
60 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacgccctttgttatgtctctccataatctacaaactgaggc |
159 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
|
| Q |
160 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaa |
246 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7669753 |
acaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaa |
7669839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University