View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_252 (Length: 255)
Name: NF9985A_low_252
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_252 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 38447105 - 38447296
Alignment:
| Q |
11 |
caaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447105 |
caaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaaga |
38447204 |
T |
|
| Q |
111 |
agaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgaggtatttttgctcatgttttactttc |
202 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38447205 |
agaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcgaggtatttttgttcatgttttactttc |
38447296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 26033586 - 26033464
Alignment:
| Q |
42 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
141 |
Q |
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|||||| ||| | |||||||||||| |||| ||| | ||| |||||||||||||||||| |||||||||||| ||||| ||| ||| ||| ||| |
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| T |
26033586 |
aagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaag |
26033487 |
T |
|
| Q |
142 |
tatggtggattcaaatggtctaa |
164 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
26033486 |
tatggtgaattcaaatggtctaa |
26033464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 38180670 - 38180792
Alignment:
| Q |
42 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
141 |
Q |
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|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || ||| |
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| T |
38180670 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38180769 |
T |
|
| Q |
142 |
tatggtggattcaaatggtctaa |
164 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
38180770 |
tatggtgaattcaaatggtctaa |
38180792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 38190461 - 38190339
Alignment:
| Q |
42 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
141 |
Q |
| |
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|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || ||| |
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| T |
38190461 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38190362 |
T |
|
| Q |
142 |
tatggtggattcaaatggtctaa |
164 |
Q |
| |
|
||||||| ||||||||||||||| |
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| T |
38190361 |
tatggtgaattcaaatggtctaa |
38190339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 38207894 - 38208016
Alignment:
| Q |
42 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
141 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || ||| |
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| T |
38207894 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38207993 |
T |
|
| Q |
142 |
tatggtggattcaaatggtctaa |
164 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38207994 |
tatggtgaattcaaatggtctaa |
38208016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 38217686 - 38217564
Alignment:
| Q |
42 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
141 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || ||| |
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| T |
38217686 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38217587 |
T |
|
| Q |
142 |
tatggtggattcaaatggtctaa |
164 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38217586 |
tatggtgaattcaaatggtctaa |
38217564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 38456030 - 38456152
Alignment:
| Q |
42 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag |
141 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || ||| |
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| T |
38456030 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38456129 |
T |
|
| Q |
142 |
tatggtggattcaaatggtctaa |
164 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38456130 |
tatggtgaattcaaatggtctaa |
38456152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 38342402 - 38342593
Alignment:
| Q |
11 |
caaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaaga |
110 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| ||||||||||||||| |||||||| |
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| T |
38342402 |
caaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaaga |
38342501 |
T |
|
| Q |
111 |
agaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttttgctcatgttttactt |
200 |
Q |
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|||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||||| ||||| ||||||| |
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| T |
38342502 |
agaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttactt |
38342593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 38446595 - 38446786
Alignment:
| Q |
11 |
caaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaaga |
110 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| ||||||||||||||| |||||||| |
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| T |
38446595 |
caaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaaga |
38446694 |
T |
|
| Q |
111 |
agaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttttgctcatgttttactt |
200 |
Q |
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|||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||||| ||||| ||||||| |
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| T |
38446695 |
agaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttactt |
38446786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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