View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_255 (Length: 254)

Name: NF9985A_low_255
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_255
NF9985A_low_255
[»] chr5 (2 HSPs)
chr5 (5-180)||(39184666-39184841)
chr5 (32-179)||(8730355-8730501)
[»] chr1 (3 HSPs)
chr1 (32-180)||(17032951-17033100)
chr1 (5-172)||(42373586-42373752)
chr1 (28-179)||(19598028-19598180)
[»] chr2 (2 HSPs)
chr2 (32-179)||(25505406-25505552)
chr2 (45-179)||(22885907-22886042)
[»] chr4 (3 HSPs)
chr4 (47-165)||(46699364-46699483)
chr4 (80-135)||(12295557-12295612)
chr4 (28-66)||(16501262-16501300)
[»] chr3 (2 HSPs)
chr3 (27-178)||(25595029-25595180)
chr3 (18-128)||(5556047-5556158)
[»] chr7 (1 HSPs)
chr7 (28-115)||(37792821-37792908)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 39184841 - 39184666
Alignment:
Q  5 gtttcgtgttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatat 104  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39184841 gtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatat 39184742  T
Q  105 tcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggagtctttcaactttgttgtcttgt 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  39184741 tcttcgtggctgcttcttcggaatgctatggcgttgtggccgctttccttgaagtctttcaactttgttgtcttgt 39184666  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 8730355 - 8730501
Alignment:
Q  32 tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgct 131  Q
    |||||||| |||||||| || |||| | ||||||||| |||||| || |||||||||||| | |||||||||||  | |||| ||| ||||   ||||||    
T  8730355 tgttgctgcctgttttcatg-tgagacagtttggcagtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgct 8730453  T
Q  132 atggcggtgtggccgctttccttggagtctttcaactttgttgtcttg 179  Q
    |||||| ||| |  |||| |||||||| ||||||||||||||||||||    
T  8730454 atggcgatgttgttgcttaccttggagactttcaactttgttgtcttg 8730501  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 17032951 - 17033100
Alignment:
Q  32 tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttgg-ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgc 130  Q
    ||||||||  ||||||||||||||| ||||||||||| |||||||| | |||||||| ||  |||||||| |||||  ||||||||||||||||||||||    
T  17032951 tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattcaacgtggctgcttcttcggaatgc 17033050  T
Q  131 tatggcggtgtggccgctttccttggagtctttcaactttgttgtcttgt 180  Q
    ||||||| |||||| ||||||||| ||| | |||||||||||||||||||    
T  17033051 tatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgt 17033100  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 42373586 - 42373752
Alignment:
Q  5 gtttcgtgttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatat 104  Q
    ||||||| ||||||| ||| |||| | |||| ||| ||||||||||||||||| |||||| | ||||||||||| ||||||| |||| ||||||||||||    
T  42373586 gtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgaggtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatat 42373684  T
Q  105 tcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggagtctttcaactttgt 172  Q
    ||   |||||||||||||||||||||||||||| ||| || | ||||||||||| | |||||||||||    
T  42373685 tcactgtggctgcttcttcggaatgctatggcgatgttgctgatttccttggagaccttcaactttgt 42373752  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 19598028 - 19598180
Alignment:
Q  28 tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt-tttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcgga 126  Q
    |||| ||||||| |||||| ||||| |||| |||||||  ||||||  |||| |||| ||| ||| ||||| |||||||||| |||| || |||||| ||    
T  19598028 tttgggttgctgcctgttt-cttggcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattctttgtggttgattcttcaga 19598126  T
Q  127 atgctatggcggtg-tggccgctttccttggagtctttcaactttgttgtcttg 179  Q
    ||||||||| | || | || ||||||||||||| | || ||| | |||||||||    
T  19598127 atgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttg 19598180  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 179
Target Start/End: Complemental strand, 25505552 - 25505406
Alignment:
Q  32 tgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgct 131  Q
    |||||||| |||||||| || |||| | ||||||||| |||||| || |||||||||||| | |||||||||||  | |||| ||| ||||   ||||||    
T  25505552 tgttgctgcctgttttcatg-tgagacagtttggcagtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgct 25505454  T
Q  132 atggcggtgtggccgctttccttggagtctttcaactttgttgtcttg 179  Q
    |||||| ||| |  |||| |||||||| ||||||||||||||||||||    
T  25505453 atggcgatgttgttgcttaccttggagactttcaactttgttgtcttg 25505406  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 22886042 - 22885907
Alignment:
Q  45 tttcttggtgaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtgg 143  Q
    ||||||||||||| |||||||| |||| |||| |  |||||||  | | |||||||||||||| | ||||||||||||||| ||||||| |||| |||      
T  22886042 tttcttggtgaggtggtttggcggcgtggtttctatctctatcactagtttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttc 22885943  T
Q  144 ccgctttccttggagtctttcaactttgttgtcttg 179  Q
    | ||||||||| ||| |||||||  |||||||||||    
T  22885942 ctgctttccttagagactttcaatcttgttgtcttg 22885907  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 46699483 - 46699364
Alignment:
Q  47 tcttggtgaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggcc 145  Q
    ||||||||||| |||||||| ||||||||| |  || ||||| ||| ||||||||| ||||  | ||||||||||||||||||| ||||| | ||| ||     
T  46699483 tcttggtgaggtggtttggcggcgtagtttatatctttatcgctggtttgtgggtaaattcaccatggctgcttcttcggaatgttatggtgatgttgct 46699384  T
Q  146 gctttccttggagtctttca 165  Q
    ||||||||| ||| ||||||    
T  46699383 gctttccttcgagactttca 46699364  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 12295557 - 12295612
Alignment:
Q  80 ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatgg 135  Q
    |||||| | ||| ||||||||||||||  ||||||||||||||| |||||||||||    
T  12295557 ctctattgatggtttgtgggtatattcaccgtggctgcttcttcagaatgctatgg 12295612  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 16501262 - 16501300
Alignment:
Q  28 tttgtgttgctgtctgttttcttggtgaggcggtttggc 66  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  16501262 tttgtgtggccgtctgttttcttggtgaggcggtttggc 16501300  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 25595180 - 25595029
Alignment:
Q  27 ttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcgga 126  Q
    |||||||||||||  ||||| |||||||||||||||||||| |||||||| | |||||||| | | || ||||||| ||   ||||||||| | || |||    
T  25595180 ttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcgctcgtttatgggtattttaaccgtggctgcatttttgga 25595082  T
Q  127 atgctatggcggtgtggccgctttcc-ttggagtctttcaactttgttgtctt 178  Q
    | || |||||| ||| || ||||||| |||||| |||||| ||| | ||||||    
T  25595081 aggcaatggcgatgttgctgctttcctttggagactttcatcttcgctgtctt 25595029  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 5556047 - 5556158
Alignment:
Q  18 atagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctg 116  Q
    |||||||||| ||||||||||||  ||||||| ||||| ||||||| ||| || | |||||| |||| ||| ||| ||||||||||||||    ||| ||    
T  5556047 atagatatgtgtttgtgttgctgcttgttttcatggtgtggcggttaggctgcattgttttgtctctgtcgctggtttgtgggtatattcactatggttg 5556146  T
Q  117 cttcttcggaat 128  Q
    ||||||||||||    
T  5556147 cttcttcggaat 5556158  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 37792821 - 37792908
Alignment:
Q  28 tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggct 115  Q
    |||||||||||||||| |||||||||  |  |||||||| ||||||||| || |||| ||||||| |||||||| ||||| ||||||||    
T  37792821 tttgtgttgctgtctg-tttcttggttggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttattcatcgtggct 37792908  T

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