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This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_258 (Length: 254)

Name: NF9985A_low_258
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_258
NF9985A_low_258
[»] chr6 (16 HSPs)
chr6 (124-249)||(17095606-17095739)
chr6 (30-213)||(17066986-17067177)
chr6 (56-249)||(16870346-16870529)
chr6 (56-126)||(16558631-16558701)
chr6 (56-176)||(16655604-16655728)
chr6 (58-134)||(16984995-16985068)
chr6 (177-242)||(16985125-16985190)
chr6 (56-97)||(16784821-16784862)
chr6 (209-249)||(16794920-16794960)
chr6 (205-249)||(16841534-16841578)
chr6 (198-249)||(16975728-16975779)
chr6 (214-249)||(17067196-17067231)
chr6 (219-249)||(16655782-16655812)
chr6 (219-247)||(16558494-16558522)
chr6 (221-249)||(16778898-16778926)
chr6 (221-249)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (43-249)||(7055690-7055894)
chr3 (209-249)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (164-249)||(13375738-13375832)
[»] scaffold0133 (4 HSPs)
scaffold0133 (71-125)||(6069-6120)
scaffold0133 (209-249)||(10558-10598)
scaffold0133 (209-249)||(15855-15895)
scaffold0133 (221-249)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (221-249)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 17095606 - 17095739
Alignment:
Q  124 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaatt--------ttaccacgaaatgttggttttacatcagattccaattta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||| |||||||| |    
T  17095606 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaattaaattaaattaccacgaaatgttggttttgcatcagtttccaattca 17095705  T
Q  216 aattcaggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||| |||||||||||    
T  17095706 aattcaggaatgtgagctatctaatgccaatctt 17095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 17066986 - 17067177
Alignment:
Q  30 ggcggtgccagaattgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga- 128  Q
    |||||||| ||||| ||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |     
T  17066986 ggcggtgcaagaatcgcttcccccaattccatgctgatttaatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattttat 17067085  T
Q  129 --tatagtaagacaaaagataaatg--aacaagtaaagagattcattaaatt---ttaccacgaaatgttggttttacatcagattccaatt 213  Q
      ||||||||||||||| | ||| |  || || | ||||||||| |||||||   ||||||| || |||||||||| ||||||||| |||||    
T  17067086 tctatagtaagacaaaaaagaaaggaaaaaaaattaagagattcgttaaattaaattaccacaaattgttggttttgcatcagattgcaatt 17067177  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 16870529 - 16870346
Alignment:
Q  56 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatat---agtaagacaaaagataaatga 152  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||| || |||||| ||||   ||||| |||||||| ||| ||    
T  16870529 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatattatagtaacacaaaagacaaagga 16870430  T
Q  153 acaagtaaagagattcattaaattttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    |    | ||       ||||||||  ||||| |||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16870429 a----tcaa-------attaaatt--accacaaaatgttggttttttatcagattccaaataaaattcaggaatgtgagctatcttatgccaatctt 16870346  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 16558701 - 16558631
Alignment:
Q  56 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataattt 126  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||| || ||||||    
T  16558701 ttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattt 16558631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 16655604 - 16655728
Alignment:
Q  56 ttccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga---tatagtaagacaaaagataaatga 152  Q
    ||||||||||||  |||||| || |||||||||||||||||||||||||||| |||||||| || | ||||||   |||||||| |||||||| ||| ||    
T  16655604 ttccatgctgataagatattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatattatagtaacacaaaagacaaagga 16655703  T
Q  153 a-caagtaaagagattcattaaatt 176  Q
    | ||| ||||| ||||| |||||||    
T  16655704 atcaaataaagggattcgttaaatt 16655728  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 16984995 - 16985068
Alignment:
Q  58 ccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagt 134  Q
    |||||||||| |||||||||| ||||| ||||||||||||||   |||||||||||||| |||||||||||||||||    
T  16984995 ccatgctgatatgatattctctgcacatattgttcaatataa---gtctaaaatcacaccatataatttgatatagt 16985068  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 16985125 - 16985190
Alignment:
Q  177 ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgc 242  Q
    |||||| | |||||||||||| || ||||||| || | ||||||||||||||||||||||||||||    
T  16985125 ttaccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgc 16985190  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 16784821 - 16784862
Alignment:
Q  56 ttccatgctgatttgatattctcagcacacattgttcaatat 97  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  16784821 ttccatgctgatttgatattctctgcacacattgtttaatat 16784862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 16794920 - 16794960
Alignment:
Q  209 caatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  16794920 caattcaaattcaggaacgtgagctatcttatgccaatctt 16794960  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 16841534 - 16841578
Alignment:
Q  205 attccaatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||| |||  |||||||||||||||||||||||||||||    
T  16841534 attccaatttcaatctaggaatgtgagctatcttatgccaatctt 16841578  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 16975779 - 16975728
Alignment:
Q  198 acatcagattccaatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  16975779 acatcagattccaatttaaatttaggaacatgagctgtcttataccaatctt 16975728  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 17067196 - 17067231
Alignment:
Q  214 taaattcaggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||| |||||||||||||    
T  17067196 taaattcaggaatgtgagctattttatgccaatctt 17067231  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 16655782 - 16655812
Alignment:
Q  219 tcaggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||||||||||||    
T  16655782 tcaggaatgtgagctatcttatgccaatctt 16655812  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 16558522 - 16558494
Alignment:
Q  219 tcaggaatgtgagctatcttatgccaatc 247  Q
    |||||||||||||||||||||||||||||    
T  16558522 tcaggaatgtgagctatcttatgccaatc 16558494  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 16778898 - 16778926
Alignment:
Q  221 aggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||||||||||    
T  16778898 aggaatgtgagctatcttatgccaatctt 16778926  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 16784994 - 16785022
Alignment:
Q  221 aggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||||||||||    
T  16784994 aggaatgtgagctatcttatgccaatctt 16785022  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 249
Target Start/End: Complemental strand, 7055894 - 7055690
Alignment:
Q  43 ttgcttccccgtattccatgctgatttgatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagtaagacaaa 142  Q
    ||||||||| ||||| ||||||||| |||||||||| |||| |||||||||||||||   ||||| || || |  ||||   | |||||||||||| |||    
T  7055894 ttgcttccctgtattgcatgctgatatgatattctctgcacccattgttcaatataa---gtctagaaccatagcatat---tggatatagtaagaaaaa 7055801  T
Q  143 agataaatgaacaag-taaagagattcattaaatt---ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatctt 238  Q
    ||| ||| ||| ||  ||||| |||| ||||||||   ||||||| ||||| || |||| |||||||||||||| | ||| | |||||||||||||||||    
T  7055800 agagaaaggaataatataaagggattgattaaattaaattaccacaaaatgatgtttttgcatcagattccaatatcaatgccggaatgtgagctatctt 7055701  T
Q  239 atgccaatctt 249  Q
    |||||||||||    
T  7055700 atgccaatctt 7055690  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 38941802 - 38941762
Alignment:
Q  209 caatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  38941802 caattcaaattcaggaatgtgagctatcttatgccaatctt 38941762  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 13375738 - 13375832
Alignment:
Q  164 gattcattaaatt---ttaccacgaaatgttggttttacatca------gattccaatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||   ||||||| ||||||||||||| |||||      |||||||||| || |||||| |||||||||||||||| ||||||||    
T  13375738 gattcattaaattaaattaccacaaaatgttggttttgcatcaaatttagattccaattcaacttcaggtatgtgagctatcttatcccaatctt 13375832  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 6069 - 6120
Alignment:
Q  71 atattctcagcacacattgttcaatataataagtctaaaatcacactatataatt 125  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| ||||||||    
T  6069 atattctctgcacacattgttcaat---ataagtctaaaatcacaccatataatt 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 10558 - 10598
Alignment:
Q  209 caatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  10558 caattcaacttcaggaatgtgagctatcttatgccaatctt 10598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 15855 - 15895
Alignment:
Q  209 caatttaaattcaggaatgtgagctatcttatgccaatctt 249  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  15855 caattgaaattgaggaatgtgagctatcttatgccaatctt 15895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 6222 - 6250
Alignment:
Q  221 aggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||||||||||    
T  6222 aggaatgtgagctatcttatgccaatctt 6250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 6881 - 6909
Alignment:
Q  221 aggaatgtgagctatcttatgccaatctt 249  Q
    |||||||||||||||||||||||||||||    
T  6881 aggaatgtgagctatcttatgccaatctt 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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