View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_269 (Length: 251)

Name: NF9985A_low_269
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_269
NF9985A_low_269
[»] chr3 (22 HSPs)
chr3 (22-242)||(33399476-33399696)
chr3 (25-243)||(14399495-14399713)
chr3 (25-242)||(46992149-46992366)
chr3 (25-242)||(7841918-7842135)
chr3 (25-225)||(36816419-36816619)
chr3 (27-242)||(48249772-48249987)
chr3 (25-223)||(13746624-13746822)
chr3 (25-242)||(21955141-21955358)
chr3 (25-242)||(29930309-29930526)
chr3 (25-242)||(29979463-29979680)
chr3 (25-225)||(77923-78123)
chr3 (25-223)||(9428736-9428934)
chr3 (25-223)||(30946545-30946743)
chr3 (25-225)||(7838554-7838754)
chr3 (25-223)||(3949703-3949901)
chr3 (25-223)||(6741847-6742045)
chr3 (25-223)||(8159886-8160084)
chr3 (25-223)||(16445580-16445778)
chr3 (25-242)||(6504858-6505075)
chr3 (61-173)||(25059880-25059992)
chr3 (80-223)||(50954233-50954376)
chr3 (25-118)||(4510341-4510434)
[»] chr1 (25 HSPs)
chr1 (25-242)||(26466173-26466390)
chr1 (1-242)||(32106522-32106760)
chr1 (27-242)||(25231244-25231458)
chr1 (25-242)||(16246657-16246871)
chr1 (25-242)||(21943267-21943484)
chr1 (25-242)||(7980115-7980332)
chr1 (25-242)||(50116666-50116883)
chr1 (27-242)||(38691844-38692059)
chr1 (25-242)||(37015855-37016072)
chr1 (25-242)||(46974105-46974322)
chr1 (25-225)||(51663216-51663416)
chr1 (25-223)||(29355591-29355789)
chr1 (25-223)||(41454797-41454995)
chr1 (25-134)||(5078984-5079093)
chr1 (25-223)||(20350416-20350614)
chr1 (25-223)||(44620006-44620204)
chr1 (25-172)||(13174792-13174939)
chr1 (25-223)||(3947364-3947562)
chr1 (25-223)||(3984073-3984271)
chr1 (25-223)||(13630376-13630574)
chr1 (25-223)||(38775018-38775216)
chr1 (25-223)||(44466542-44466740)
chr1 (38-118)||(39914002-39914082)
chr1 (27-134)||(12649484-12649589)
chr1 (25-173)||(25593678-25593826)
[»] chr5 (20 HSPs)
chr5 (25-227)||(20285965-20286167)
chr5 (25-209)||(23028463-23028654)
chr5 (66-218)||(13157978-13158130)
chr5 (42-242)||(20286449-20286650)
chr5 (25-225)||(18537239-18537439)
chr5 (25-134)||(7020783-7020892)
chr5 (27-242)||(25896006-25896221)
chr5 (25-134)||(27866748-27866857)
chr5 (25-134)||(34078829-34078938)
chr5 (38-242)||(1035466-1035670)
chr5 (25-197)||(13567005-13567177)
chr5 (27-242)||(7799911-7800126)
chr5 (25-172)||(4202842-4202989)
chr5 (25-223)||(11032355-11032553)
chr5 (25-223)||(37819780-37819978)
chr5 (25-223)||(38859093-38859291)
chr5 (25-118)||(28885311-28885404)
chr5 (25-110)||(1036424-1036509)
chr5 (25-109)||(25048472-25048556)
chr5 (26-78)||(9376677-9376729)
[»] chr4 (16 HSPs)
chr4 (25-206)||(6182653-6182834)
chr4 (25-242)||(18580231-18580448)
chr4 (25-225)||(4976713-4976913)
chr4 (25-223)||(9890982-9891180)
chr4 (25-225)||(4978857-4979057)
chr4 (25-172)||(11502517-11502664)
chr4 (27-126)||(19072562-19072661)
chr4 (28-242)||(21471735-21471949)
chr4 (25-134)||(3404839-3404948)
chr4 (25-134)||(41024248-41024357)
chr4 (31-135)||(4769178-4769282)
chr4 (25-223)||(49565367-49565565)
chr4 (25-225)||(51643401-51643603)
chr4 (150-242)||(17140530-17140622)
chr4 (26-106)||(38463741-38463821)
chr4 (150-242)||(38463825-38463917)
[»] chr2 (22 HSPs)
chr2 (10-226)||(17997060-17997276)
chr2 (25-242)||(41007883-41008100)
chr2 (27-242)||(12907397-12907612)
chr2 (24-242)||(11692716-11692934)
chr2 (25-202)||(436292-436469)
chr2 (25-242)||(43949185-43949402)
chr2 (25-223)||(7263992-7264190)
chr2 (25-134)||(3802469-3802578)
chr2 (25-134)||(27275263-27275372)
chr2 (25-242)||(28354805-28355022)
chr2 (25-242)||(24750599-24750816)
chr2 (25-225)||(24604992-24605192)
chr2 (25-223)||(212344-212542)
chr2 (25-223)||(10623357-10623555)
chr2 (25-134)||(5348216-5348325)
chr2 (25-134)||(34920685-34920794)
chr2 (25-134)||(41561061-41561170)
chr2 (25-134)||(45476407-45476516)
chr2 (25-223)||(39794930-39795128)
chr2 (25-223)||(38946723-38946921)
chr2 (81-242)||(1100042-1100203)
chr2 (152-242)||(34920802-34920892)
[»] chr7 (15 HSPs)
chr7 (25-242)||(8400527-8400744)
chr7 (25-242)||(43827509-43827726)
chr7 (25-242)||(47061824-47062041)
chr7 (39-242)||(21799953-21800156)
chr7 (25-223)||(18106348-18106546)
chr7 (25-223)||(617652-617850)
chr7 (25-223)||(30787499-30787697)
chr7 (25-223)||(43623038-43623236)
chr7 (25-223)||(45764339-45764537)
chr7 (25-134)||(15060662-15060771)
chr7 (38-173)||(20908433-20908568)
chr7 (25-223)||(42500367-42500565)
chr7 (26-124)||(3761964-3762062)
chr7 (25-109)||(16794516-16794600)
chr7 (25-118)||(8194183-8194276)
[»] chr8 (15 HSPs)
chr8 (25-242)||(7168841-7169058)
chr8 (25-225)||(35965648-35965848)
chr8 (25-242)||(39751931-39752148)
chr8 (25-242)||(45455317-45455534)
chr8 (26-242)||(14401676-14401894)
chr8 (38-172)||(22580914-22581048)
chr8 (25-242)||(43689074-43689291)
chr8 (25-225)||(43370725-43370925)
chr8 (25-223)||(7341039-7341237)
chr8 (25-223)||(8422759-8422957)
chr8 (25-223)||(30304513-30304711)
chr8 (25-223)||(32377811-32378009)
chr8 (25-223)||(32431768-32431966)
chr8 (25-134)||(1115821-1115930)
chr8 (80-202)||(2145948-2146070)
[»] scaffold0219 (1 HSPs)
scaffold0219 (25-242)||(17010-17227)
[»] chr6 (12 HSPs)
chr6 (27-242)||(18606937-18607152)
chr6 (27-242)||(24220107-24220324)
chr6 (25-223)||(28250856-28251054)
chr6 (25-172)||(31147333-31147480)
chr6 (25-202)||(29287851-29288028)
chr6 (25-223)||(1611654-1611852)
chr6 (63-225)||(7362137-7362299)
chr6 (25-134)||(21358250-21358359)
chr6 (25-134)||(23962232-23962341)
chr6 (58-173)||(34111598-34111713)
chr6 (150-242)||(35243544-35243636)
chr6 (150-223)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (25-134)||(16260-16369)
[»] scaffold0494 (1 HSPs)
scaffold0494 (25-223)||(1841-2039)
[»] scaffold0116 (1 HSPs)
scaffold0116 (25-242)||(12203-12420)
[»] scaffold0101 (1 HSPs)
scaffold0101 (25-223)||(33769-33967)
[»] scaffold0340 (1 HSPs)
scaffold0340 (63-242)||(111-290)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 33399696 - 33399476
Alignment:
Q  22 tggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33399696 tggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacgtacaagcttcttgccatcctcctttaatctacccgcaagcat 33399597  T
Q  122 gtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  33399596 gtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgcttgcctactaagatatccacgaaccatg 33399497  T
Q  222 aacatacacctacatattctt 242  Q
    ||||||||||||||| |||||    
T  33399496 aacatacacctacattttctt 33399476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 14399713 - 14399495
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||| |||||    
T  14399713 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatccttctttaatctaccggcaagaatgtg 14399614  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||  | ||||||||||||||||| ||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  14399613 tccttctaaagccggctccatggcatggttgtgaactccatttagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 14399514  T
Q  225 atacacctacatattcttc 243  Q
    | ||||| |||| ||||||    
T  14399513 aaacacccacattttcttc 14399495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 46992149 - 46992366
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || ||||| |||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  46992149 tcttcaaatgtatcaaaaaatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 46992248  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  46992249 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 46992348  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  46992349 aagcacccacattttctt 46992366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 7841918 - 7842135
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  7841918 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacaggcaagaatgtg 7842017  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  7842018 tccttctaaagccggcttcatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 7842117  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  7842118 aagcacccacattttctt 7842135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 36816419 - 36816619
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  36816419 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 36816518  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  36816519 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 36816618  T
Q  225 a 225  Q
    |    
T  36816619 a 36816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 48249772 - 48249987
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||  ||||||| | ||||||||||||||||| ||||| |||||||    
T  48249772 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacagtcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 48249871  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     || ||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  48249872 cttataaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 48249971  T
Q  227 acacctacatattctt 242  Q
     |||| |||| |||||    
T  48249972 gcacccacattttctt 48249987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 13746624 - 13746822
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  13746624 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 13746723  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13746724 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13746822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 21955141 - 21955358
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||  |||||    
T  21955141 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaataatgtg 21955240  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||| |    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || |||||||    
T  21955241 tccttctagagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttacttactttgatatccactaatcatgaac 21955340  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  21955341 aagcacccacattttctt 21955358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 29930526 - 29930309
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||| | ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||||||||  |||| |||||    
T  29930526 tcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtg 29930427  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  29930426 tccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 29930327  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  29930326 aagcacccacattttctt 29930309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 29979680 - 29979463
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||| | ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||||||||  |||| |||||    
T  29979680 tcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtg 29979581  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  29979580 tccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 29979481  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  29979480 aagcacccacattttctt 29979463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 77923 - 78123
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||||  |||||    
T  77923 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcaataatgtg 78022  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | ||||   ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  78023 tccttctaaagccggctccatcaaatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 78122  T
Q  225 a 225  Q
    |    
T  78123 a 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 9428736 - 9428934
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  9428736 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 9428835  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9428836 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 30946545 - 30946743
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| |||||    
T  30946545 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcatcctcctttaatctaccggcaagaatgtg 30946644  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30946645 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 7838754 - 7838554
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| |||||||||     |||||||||||||||| ||||| ||||||| | |||||||||| |||||| | ||| |||||    
T  7838754 tcttcaaatgtatcaaaatatttcttggaagcatattgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggaaagaatgtg 7838655  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||| ||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  7838654 tccttctaaagccggctccatcgcatggttgtgaactccactaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 7838555  T
Q  225 a 225  Q
    |    
T  7838554 a 7838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 3949901 - 3949703
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3949901 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3949802  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3949801 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 6742045 - 6741847
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  6742045 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 6741946  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  6741945 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 6741847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 8159886 - 8160084
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  8159886 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 8159985  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8159986 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8160084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 16445778 - 16445580
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  16445778 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtg 16445679  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  16445678 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 16445580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 6504858 - 6505075
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| |||||| || |    ||||||||||||||  ||||| ||||||  | |||||||||| |||||| ||||| |||||    
T  6504858 tcttcaaatgtatcaaaatatttcttggaaacatcttgttcttggtcaagtcatgtacaatcttcttttcgtcctcctttagtctaccggcaagaatgtg 6504957  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  6504958 tcattctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 6505057  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  6505058 aagcacccacattttctt 6505075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 25059880 - 25059992
Alignment:
Q  61 aactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaac 160  Q
    ||||||||||||||||||||| || || |||| | |||| | |||||||  ||||||| ||||| | | |||||  | || ||||||  |||||||||||    
T  25059880 aactcttggtcaagtcacatataatctccttgtcgtccttcattaatctttccgcaagaatgtgccctgctaaatatggtaacatcttatggttgtgaac 25059979  T
Q  161 tccattaagaata 173  Q
     ||||||||||||    
T  25059980 accattaagaata 25059992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 50954376 - 50954233
Alignment:
Q  80 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 179  Q
    ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||    
T  50954376 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaat 50954277  T
Q  180 ctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    | | | || ||||||||| ||||  ||||| ||| || ||||||    
T  50954276 ccccattcctttgtttgcttactttgatatccactaatcatgaa 50954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 4510434 - 4510341
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 118  Q
    |||||||||||  |||||||||||||||   |||| |||| ||||||||||||  || ||  |||||| | |||||| ||||||| ||||||||    
T  4510434 tcttcaaatttgtcaaaatattttttggtttcaccgaactattggtcaagtcatgtataattttcttgtcgtcctccattaatcttcccgcaag 4510341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 26466173 - 26466390
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||||||||||||||||| |||||||||||  | ||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||    
T  26466173 tcttcaaatttaacaaaatatttcttggaagcaccttagtcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacccgcaagcatgtg 26466272  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  26466273 tcattctaaagccggctccatctcatggttgtgaactccattaagaatgtttaatctccaatcatttgtttgcctactaagatatccacgaacaatgaac 26466372  T
Q  225 atacacctacatattctt 242  Q
    |||||||||||| |||||    
T  26466373 atacacctacattttctt 26466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32106522 - 32106760
Alignment:
Q  1 ttgtcttgtaatgttgacttgtggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctc 100  Q
    |||||||| ||| ||| ||| || ||||||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||| ||| ||| |||    
T  32106522 ttgtcttgcaatcttgtcttttgctcttcaaatttaacaac-tattttttcaaagcaccaaactcttggtcaagtcacatacaagctttttgtcattctc 32106620  T
Q  101 ctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgccta 200  Q
    |||||||||||| |||| |||||||| |||||||||| | | |||||| || ||||||||||  ||||||||||| |||||| |||||||||||| |||     
T  32106621 ctttaatctaccagcaatcatgtgtccttctaaacttggctccatctcatgattgtgaactc--ttaagaatattcaatctccaatcatttgtttacctt 32106718  T
Q  201 ctaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||| |||||||||||||||| |||| |||| |||||    
T  32106719 ctaagatatccacgaaccatgaacattcacccacattttctt 32106760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 25231458 - 25231244
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||||||||||||||||| ||  |||||||||||  ||||||||||||| ||||| |||||||  ||||||| || ||||||| |||||||||||||    
T  25231458 ttcaaatttaacaaaatatttgttaaaagcaccaaacatttggtcaagtcacgtacaatcttcttggtatcctcccttgatctacctgcaagcatgtgtc 25231359  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     ||| |||||| | | | ||||  |||||||||||||||| | |||||| |||||| | |||||||||| |||||||| |||| || |||  ||| ||||    
T  25231358 cttccaaacttggcttcgtctcacggttgtgaactccattgaaaatattcaatctccagtcatttgtttccctactaatatatccaggaagaatg-acat 25231260  T
Q  227 acacctacatattctt 242  Q
    ||||| |||| |||||    
T  25231259 acacccacattttctt 25231244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 16246657 - 16246871
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||||||||||||||||||||| || ||| |||||   || ||||| ||||||| ||||| ||||||| ||||||| ||||||||||| | |||||||||    
T  16246657 tcttcaaatttaacaaaatattctt-ggatgcaccttgcttttggt-aagtcacgtacaatcttcttgtcatcctcttttaatctaccggtaagcatgtg 16246754  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||||| |  | | |||| | |||||||||||| |||||| ||| || |||||| | ||||||||||||||||  |||||||||| ||||||||||    
T  16246755 tccttctaaagtcggctccatcgcatggttgtgaacttcattaacaat-ttcaatctccattcatttgtttgcctacacagatattcactaaccatgaac 16246853  T
Q  225 atacacctacatattctt 242  Q
    ||||||| |||| |||||    
T  16246854 atacacccacattttctt 16246871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 21943267 - 21943484
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  21943267 tcttcaaatttatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtg 21943366  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||||||   | | |||| | ||||||||||||||||| ||||| || |||| | | || ||||||||||||||  ||||| ||| |||||| |||    
T  21943367 tccttctaaacccggctccatcccatggttgtgaactccattgagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccataaac 21943466  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  21943467 aagcacccacattttctt 21943484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 7980115 - 7980332
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  7980115 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtg 7980214  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||      | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  7980215 tccttctaaagccgactgcattgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 7980314  T
Q  225 atacacctacatattctt 242  Q
    | ||||| |||| |||||    
T  7980315 aaacacccacattttctt 7980332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 50116666 - 50116883
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| | ||||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||| |||||    
T  50116666 tcttcaaatgtatcaaaatatttcttggaagcatctaactcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 50116765  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | |||| |||||||||||||||||| || |||||| | || ||| ||||| ||||  ||||| ||| || |||||||    
T  50116766 tccttctaaagccggctccatcgcatggtagtgaactccattaagaatgttcaatctccattcctttatttgcttactttgatatccactaatcatgaac 50116865  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  50116866 aagcacccacattttctt 50116883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 38691844 - 38692059
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| | |||||    
T  38691844 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggcaagaacgtgtc 38691943  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  38691944 cttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 38692043  T
Q  227 acacctacatattctt 242  Q
    ||||| |||| |||||    
T  38692044 acacccacattttctt 38692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 37016072 - 37015855
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||| |||||    
T  37016072 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgcacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 37015973  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  37015972 tccttctaaagccagctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 37015873  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  37015872 aagcacccacattttctt 37015855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 46974322 - 46974105
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||| |||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| |||||    
T  46974322 tctttaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatgtaccggcaagaatgtg 46974223  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||||| |  | | |||| | ||||||| ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  46974222 tccttctaaagtcggctccatcgcatggttgtaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 46974123  T
Q  225 atacacctacatattctt 242  Q
    | ||||| |||| |||||    
T  46974122 aaacacccacattttctt 46974105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 51663416 - 51663216
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||| | ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  51663416 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcgcgtacaatcttcttgtcctcctcctttaatctaccagcaagaatgtg 51663317  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||| ||||||||||||| || |||| | | || ||||||||| ||||  ||||||||| || |||||||    
T  51663316 tcattctaaagccggcttcatcgcatggttgtgagctccattaagaatgttcaatccccattcttttgtttgcttactttgatattcactaatcatgaac 51663217  T
Q  225 a 225  Q
    |    
T  51663216 a 51663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 29355591 - 29355789
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  29355591 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 29355690  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  29355691 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 29355789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 41454995 - 41454797
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  41454995 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41454896  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  41454895 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 41454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 5079093 - 5078984
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| ||  ||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  5079093 tcttcaaatgtattaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtg 5078994  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  5078993 tccttctaaa 5078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 20350614 - 20350416
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  20350614 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 20350515  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  20350514 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 20350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 44620006 - 44620204
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  44620006 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 44620105  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44620106 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44620204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 13174939 - 13174792
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| || || |||||    
T  13174939 tcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccagcgagaatgtg 13174840  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 172  Q
    || | |||||    | | |||| | |||||||||||||||||||||||    
T  13174839 tcctcctaaagccggctccatcgcatggttgtgaactccattaagaat 13174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 3947364 - 3947562
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3947364 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3947463  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3947464 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3947562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 3984271 - 3984073
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  3984271 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3984172  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3984171 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 13630574 - 13630376
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||    
T  13630574 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtg 13630475  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13630474 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 38775018 - 38775216
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  38775018 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 38775117  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38775118 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 44466740 - 44466542
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  44466740 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 44466641  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44466640 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 39914082 - 39914002
Alignment:
Q  38 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 118  Q
    ||||||||||||| |  |||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||| | ||||||    
T  39914082 caaaatatttttttgttgcaccaaactcttggtcaagtcacgtacaatcttcttgtcatccttcattaatcttctcgcaag 39914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 12649484 - 12649589
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | | |||  ||||| |||| ||||| |||||||    
T  12649484 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtgctc--ttaatttaccggcaagaatgtgtc 12649581  T
Q  127 tttctaaa 134  Q
     |||||||    
T  12649582 cttctaaa 12649589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 25593826 - 25593678
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||||||||||  |||||||||||||||    ||| |||| ||||||||||||||||||| |  |||| | |||||| ||||| | |||||||| | |||    
T  25593826 tcttcaaatttgtcaaaatattttttggttttaccgaactattggtcaagtcacatacaatcgccttgtcgtcctccattaatattcccgcaagaaggtg 25593727  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaata 173  Q
     | | |||||  | |  ||||||  ||||||||||| ||||||||||||    
T  25593726 ccctgctaaatatggcaacatcttatggttgtgaacaccattaagaata 25593678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 20286167 - 20285965
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  20286167 tcttcaaatttaacaaaatatttcttggaagcaccttactcttggttaagtcacatacaatcttcttgtcatcctcctttaatctacccgcaagcatgtg 20286068  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || | | || | |||||||||||||||||||||||| |||  |||||||||    
T  20286067 tccttctaaagccggctccatcacatggttgtgaactccattaagaatgttcagtttccattcatttgtttgcctactaagatatccacttaccatgaac 20285968  T
Q  225 ata 227  Q
    |||    
T  20285967 ata 20285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 23028463 - 23028654
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcaca-------tacaagcttcttgccatcctcctttaatctacccgcaa 117  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||        ||||| ||||||| |||||||| |||||||||||||||    
T  23028463 tcttcaaatttaataaaatattttttgaaagcatcaaactcttggtcaagtcaccaatcatgtacaatcttcttgtcatcctcccttaatctacccgcaa 23028562  T
Q  118 gcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 209  Q
    ||||||||  ||||||||||   | |||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  23028563 gcatgtgttcttctaaacttgccttcatctcatggttgtgaactccattaataatattcaatctccaatcatttgtttccctactaagatat 23028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 13157978 - 13158130
Alignment:
Q  66 ttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccat 165  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| || |||| ||   | ||| || ||||||||||||||||    
T  13157978 ttggtgaagtcacatacaagtttcttgtcatcctcctttaatctacccgcaagcatgcgtccttttaaatttgactccatttcatggttgtgaactccat 13158077  T
Q  166 taagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaacc 218  Q
    ||||||| || |||||| |||||||||||||| || |||||||| ||||||||    
T  13158078 taagaatgttcaatctccaatcatttgtttgcttattaagatatccacgaacc 13158130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 20286650 - 20286449
Alignment:
Q  42 atattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtt 141  Q
    |||||| ||||| |||||  ||||||||||||||||  ||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||    | |    
T  20286650 atatttcttggatgcaccttactcttggtcaagtcatgtacaatctttttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccggct 20286551  T
Q  142 acatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac-gaaccatgaacatacacctacatattc 240  Q
     |||| | ||||||| ||||||||||||||| || |   || | |||||||||||||||||||||||| |||  | ||||||||||||||| |||| |||    
T  20286550 ccatcacatggttgtaaactccattaagaatgttcaggttccattcatttgtttgcctactaagatatccacttacccatgaacatacacccacattttc 20286451  T
Q  241 tt 242  Q
    ||    
T  20286450 tt 20286449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 18537239 - 18537439
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |  ||||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  18537239 tcttcaaatgtatcaaaatatttcttggaagcatctcactcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 18537338  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||  | | |  ||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || |||||||    
T  18537339 tccttctaaagctggctcaatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgttttcttactttgatatccactaatcatgaac 18537438  T
Q  225 a 225  Q
    |    
T  18537439 a 18537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 7020783 - 7020892
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  7020783 tcttcaaatgtatcaaaatatttcttggaagcatcttcctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7020882  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  7020883 tccttctaaa 7020892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 25896006 - 25896221
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  25896006 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 25896105  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  25896106 cttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 25896205  T
Q  227 acacctacatattctt 242  Q
     |||| |||| |||||    
T  25896206 gcacccacattttctt 25896221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 27866748 - 27866857
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  27866748 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 27866847  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  27866848 tccttctaaa 27866857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 34078938 - 34078829
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  34078938 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 34078839  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  34078838 tccttctaaa 34078829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 1035466 - 1035670
Alignment:
Q  38 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  1035466 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1035565  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacata 237  Q
     | | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| ||||     
T  1035566 ggctccatggcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacatt 1035665  T
Q  238 ttctt 242  Q
    |||||    
T  1035666 ttctt 1035670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 13567005 - 13567177
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||| |||||||||||| ||||| |||||    
T  13567005 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtccttctttaatctaccggcaagaatgtg 13567104  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgc 197  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || |||||||||    
T  13567105 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgc 13567177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 7799911 - 7800126
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| ||||||  |||| |||||||    
T  7799911 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgacaagaatgtgtc 7800010  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     |||||||    | | |||| | ||||||||||||||||||||||| || |||  | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  7800011 cttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaattcccattcctttgtttgcttactttgatatccactaatcatgaacaa 7800110  T
Q  227 acacctacatattctt 242  Q
     |||| |||| |||||    
T  7800111 gcacccacattttctt 7800126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 4202842 - 4202989
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| | ||||||||||||||||| |||||  ||||    
T  4202842 tcttcaaatgtatcaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagagtgtg 4202941  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 172  Q
    || |||||||    | | |||| | |||||||||||||||||||||||    
T  4202942 tccttctaaagccggctccatcgcatggttgtgaactccattaagaat 4202989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 11032355 - 11032553
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  11032355 tcttcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 11032454  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  11032455 tcattctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 11032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 37819780 - 37819978
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||  |||||    
T  37819780 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaacaatgtg 37819879  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  37819880 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 37819978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 38859093 - 38859291
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |    | || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  38859093 tcttcaaatgtatcaaaatatttcttggaagcatcttgttttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 38859192  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  38859193 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcttttgtttgcttactttgatatccactaatcatgaa 38859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 28885311 - 28885404
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 118  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| |||||    
T  28885311 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaag 28885404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 1036509 - 1036424
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatcta 110  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||||||||    
T  1036509 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatcta 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 25048556 - 25048472
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 109  Q
    |||||||||||| ||||||||||| |||   || | |||| |||||||||||| |||||| ||||||| | |||||| |||||||    
T  25048556 tcttcaaatttatcaaaatattttatggtttcaacgaactattggtcaagtcatatacaatcttcttgtcgtcctccattaatct 25048472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 9376677 - 9376729
Alignment:
Q  26 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcac 78  Q
    ||||||||| | ||||||||| || ||  ||||||||||||||||||||||||    
T  9376677 cttcaaattcatcaaaatattcttaggtggcaccaaactcttggtcaagtcac 9376729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 6182834 - 6182653
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||||  |||||| || | ||| ||||| |||  |||||||| ||    
T  6182834 tcttaaaatttaacaaaatattttttgaaagcaccaaactcttggtcaagtcatgtacaattttcttgtcaccatcccttaatatacttgcaagcatatg 6182735  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaaga 206  Q
    || |||||||||| | | |||||| |||||||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||    
T  6182734 tccttctaaacttggcttcatctcatggttgtgaactccatcaagaatattcaatctccaatcgtttgtttccctactaaga 6182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 18580231 - 18580448
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  18580231 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 18580330  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||  | ||||||||||||||||||||||| |||||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  18580331 tcattctaaagccggcttcattgcatggttgtgaactccattaagaatgtttaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 18580430  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  18580431 aagcacccacattttctt 18580448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 4976913 - 4976713
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  4976913 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtg 4976814  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    ||||||||||    | | |||| | ||||||  ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  4976813 tctttctaaagccggctccatcgcatggttgcaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 4976714  T
Q  225 a 225  Q
    |    
T  4976713 a 4976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 9891180 - 9890982
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  9891180 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 9891081  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9891080 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9890982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 4978857 - 4979057
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || ||||||| ||| |  ||||| |||||    
T  4978857 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcatcctttagtctgctggcaagaatgtg 4978956  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||||| |  | | |||| | |||||| |||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  4978957 tccttctaaagtcggctccatcgcatggttgggaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 4979056  T
Q  225 a 225  Q
    |    
T  4979057 a 4979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 11502664 - 11502517
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||| | |||||    
T  11502664 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcatgaatgtg 11502565  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 172  Q
    || |||||||    | | |||| | ||| |||||||||||||||||||    
T  11502564 tccttctaaagccggctccatcgcatgggtgtgaactccattaagaat 11502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 19072562 - 19072661
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  19072562 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 19072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 21471949 - 21471735
Alignment:
Q  28 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 127  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||| |  |||| ||||||||    
T  21471949 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttattctatcttcaagaatgtgtct 21471850  T
Q  128 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 227  Q
    || |||| ||   | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||      
T  21471849 ttttaaagttgtctccattgtatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaag 21471750  T
Q  228 cacctacatattctt 242  Q
    |||| |||| |||||    
T  21471749 cacccacattttctt 21471735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 3404948 - 3404839
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  3404948 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtg 3404849  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  3404848 tccttctaaa 3404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 41024357 - 41024248
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||  | ||||||||||||||||| ||||| |||||    
T  41024357 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttttcgtcctcctttaatctacctgcaagaatgtg 41024258  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  41024257 tccttctaaa 41024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 4769282 - 4769178
Alignment:
Q  31 aatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttc 130  Q
    |||||| |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| |||    
T  4769282 aatttatcaaaatatttcttgaaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttc 4769183  T
Q  131 taaac 135  Q
    |||||    
T  4769182 taaac 4769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 49565367 - 49565565
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||| | ||||| |||||    
T  49565367 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 49565466  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  49565467 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 49565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 51643401 - 51643603
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||||||| |||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||    
T  51643401 tcttcaaatgtatcaaaatattttttgaaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtg 51643500  T
Q  125 tctttctaaa-cttcgttacatctcttggttgtg-aactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatga 222  Q
    || || |||| |   | | |||| | || ||||| ||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || |||||    
T  51643501 tccttataaagccgggctccatcgcatgtttgtgaaactccattaagaatgttcaatctcaattcctttgtttgcttactttgatatccactaatcatga 51643600  T
Q  223 aca 225  Q
    |||    
T  51643601 aca 51643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 17140622 - 17140530
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| ||||||||||| ||| | |||| |||||    
T  17140622 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccatgaacaaacatccacattttctt 17140530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 38463741 - 38463821
Alignment:
Q  26 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaa 106  Q
    |||||||| || |||||||||||||||||||| |   |||||||||||||||| | ||| ||||||| | |||||||||||    
T  38463741 cttcaaatgtatcaaaatattttttggaagcatcttgctcttggtcaagtcacgtgcaatcttcttgtcgtcctcctttaa 38463821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 38463825 - 38463917
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  38463825 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 38463917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 17997060 - 17997276
Alignment:
Q  10 aatgttgacttgtggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 109  Q
    ||||||| ||| || |||||||||||| |||||||||| |||||||||||   |||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  17997060 aatgttgtcttttgctcttcaaatttatcaaaatatttcttggaagcaccttgctcttggtcaagtcacgtacaatcttcttatcatcctcctttaatct 17997159  T
Q  110 acccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 209  Q
    ||| ||||||||||||| |||||||    | | |||| | |||||| ||||| ||| |||||| || |||||| | || |||||||| ||||||||||||    
T  17997160 accagcaagcatgtgtccttctaaagccggctccatcgcatggttgcgaacttcatgaagaatgttcaatctccattcctttgtttgtctactaagatat 17997259  T
Q  210 tcacgaaccatgaacat 226  Q
     ||| |||| |||||||    
T  17997260 ccactaaccttgaacat 17997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 41007883 - 41008100
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  41007883 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41007982  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | |||||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  41007983 tcattctaaagccggctacatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 41008082  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  41008083 aagcacccacattttctt 41008100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 12907397 - 12907612
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || || ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  12907397 ttcaaatgtatcagaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 12907496  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     |||||||    | | |||| | ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||     
T  12907497 cttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaa 12907596  T
Q  227 acacctacatattctt 242  Q
     |||| |||| |||||    
T  12907597 gcacccacattttctt 12907612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 11692716 - 11692934
Alignment:
Q  24 gtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgt 123  Q
    |||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||    
T  11692716 gtcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgt 11692815  T
Q  124 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    ||| ||||||| |  | |  ||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||    
T  11692816 gtccttctaaagtcggctcgatcacatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaa 11692915  T
Q  224 catacacctacatattctt 242  Q
    ||  |||| |||| |||||    
T  11692916 caagcacccacattttctt 11692934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 436469 - 436292
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  436469 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 436370  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 202  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  436369 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 436292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 43949185 - 43949402
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  43949185 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtg 43949284  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | | || | ||||||||||||||||||| ||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  43949285 tccttctaaagccggctccttcgcatggttgtgaactccattaataatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 43949384  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  43949385 aagcacccacattttctt 43949402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 7264190 - 7263992
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| |||||| || |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  7264190 tcttcaaatgtatcaaaatatttcttggaaccatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7264091  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    ||| |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7264090 tccttctaaagccggttccatgagatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 3802469 - 3802578
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  3802469 tcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 3802568  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  3802569 tccttctaaa 3802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 27275263 - 27275372
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  27275263 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 27275362  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  27275363 tccttctaaa 27275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 28354805 - 28355022
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||| |||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  28354805 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcatggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccagcaagaatgtg 28354904  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  28354905 tcattctaaagcaggctccatcgcatggttatgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 28355004  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  28355005 aagcacccacattttctt 28355022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 24750816 - 24750599
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||| |||||| |||  ||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  24750816 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctcggtcaattcatgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtg 24750717  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  24750716 tccttctaaatccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 24750617  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  24750616 aagcacccacattttctt 24750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 24604992 - 24605192
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||| ||||||  |||| |||||    
T  24604992 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaattttcttgtcgtcctcctttagtctaccgacaagaatgtg 24605091  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    |  |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  24605092 tacttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 24605191  T
Q  225 a 225  Q
    |    
T  24605192 a 24605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 212344 - 212542
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  212344 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 212443  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  212444 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 10623357 - 10623555
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  10623357 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 10623456  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  10623457 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 10623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 5348325 - 5348216
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  5348325 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 5348226  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  5348225 tccttctaaa 5348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 34920685 - 34920794
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| | ||| |||||    
T  34920685 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggtaagaatgtg 34920784  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  34920785 tccttctaaa 34920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 41561170 - 41561061
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  41561170 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 41561071  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  41561070 tccttctaaa 41561061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 45476516 - 45476407
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||  || |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  45476516 tcttcaaacgtatcaaaatatttcttgtaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45476417  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  45476416 tccttctaaa 45476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 39795128 - 39794930
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  39795128 tcttcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 39795029  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  39795028 cccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 39794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 38946921 - 38946723
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || ||||||||||  |||||||| |   |||||||||||||||| ||| | |||||||   ||||||||||||||||| ||||| |||||    
T  38946921 tcttcaagtgtatcaaaatatttcatggaagcatcttgctcttggtcaagtcacgtacgatcttcttgttgtcctcctttaatctaccggcaagaatgtg 38946822  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38946821 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38946723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 1100042 - 1100203
Alignment:
Q  81 acaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatc 180  Q
    |||| ||||||| | ||||||||||||||| | ||||| |||||||  ||||||    | | |||| | ||||||||||||||||||||||| || ||||    
T  1100042 acaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccatctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatc 1100141  T
Q  181 tcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
     | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  1100142 cccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 1100203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 34920802 - 34920892
Alignment:
Q  152 gttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  34920802 gttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 34920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 8400744 - 8400527
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||||||||||| ||||||||||||||| | || |   |||||||||||||||| ||||| ||||||| |||||||||||||| |||| ||||| |||||    
T  8400744 tcttcaaatttatcaaaatattttttggtaacatcttgctcttggtcaagtcacctacaatcttcttgtcatcctcctttaatgtaccagcaagaatgtg 8400645  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||| | ||| || |||| | | || ||||||||||||||||||||| ||| ||||||||||    
T  8400644 tccttctaaagccggctccatcgcatggttgtgaactccattgaaaatgttcaatccccattcttttgtttgcctactaagatatccactaaccatgaac 8400545  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  8400544 aagcacccacattttctt 8400527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 43827509 - 43827726
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||||||||||| |||||||||| ||||||||| |   | |||||||||||||| ||||| ||||||  | ||||||||||||||||| | ||| |||||    
T  43827509 tcttcaaatttatcaaaatatttcttggaagcatcttgcacttggtcaagtcacgtacaatcttcttttcgtcctcctttaatctaccggtaagaatgtg 43827608  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||  | | | | || | ||||||||||||||||||||||| || |||| | | || |||||||| |||||||||||| ||| ||||||||||    
T  43827609 tcattctaaagctggctccttcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgtctactaagatatccactaaccatgaac 43827708  T
Q  225 atacacctacatattctt 242  Q
    | ||||| |||| |||||    
T  43827709 aaacacccacattttctt 43827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 47062041 - 47061824
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||||||||| ||| ||| | ||||||||||||||||| ||||| |||||    
T  47062041 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatctttttgtcgtcctcctttaatctaccggcaagaatgtg 47061942  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||| ||| |  | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || |||||||    
T  47061941 tccttcaaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaac 47061842  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  47061841 aagcacccacattttctt 47061824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 21800156 - 21799953
Alignment:
Q  39 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttc 138  Q
    ||||||||||||||| |||||   |||||| | ||||||| || ||  ||||||  ||||||||||||||||||  ||| |||||||| |||||||        
T  21800156 aaaatattttttggatgcaccttgctcttgattaagtcacgtataattttcttgttatcctcctttaatctaccgacaaacatgtgtccttctaaagccg 21800057  T
Q  139 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatat 238  Q
      | |||| | ||||||||||||||||||| ||| || |||||| | |  ||||||| ||||||||||||| ||| |||||||||||| |||| |||| |    
T  21800056 actccatcgcatggttgtgaactccattaacaatgttcaatctccattgctttgttttcctactaagatatccactaaccatgaacatgcacccacattt 21799957  T
Q  239 tctt 242  Q
    ||||    
T  21799956 tctt 21799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 18106546 - 18106348
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  18106546 tcttcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacctgcaagaatgtg 18106447  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  18106446 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 18106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 617652 - 617850
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  617652 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 617751  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  617752 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 30787697 - 30787499
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  30787697 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 30787598  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30787597 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30787499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 43623038 - 43623236
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  43623038 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 43623137  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  43623138 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 43623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 45764537 - 45764339
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  45764537 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45764438  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  45764437 tcattctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 45764339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 15060771 - 15060662
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||  ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  15060771 tcttcaaatgtatcaaaatattccttggaagcatcttgctctttgtcaagtcacttacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 15060672  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  15060671 tccttctaaa 15060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 20908433 - 20908568
Alignment:
Q  38 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    ||||||||||||| |  |||||||||||||||| |||||||  |||| ||||||| |||||||| ||||||| || ||||| ||||| | ||||||  ||    
T  20908433 caaaatatttttttgttgcaccaaactcttggtaaagtcacgcacaatcttcttgtcatcctcccttaatcttcctgcaagaatgtgcccttctaacatt 20908532  T
Q  138 cgttacatctcttggttgtgaactccattaagaata 173  Q
         | |||| ||||||||||||||||||||||||    
T  20908533 gccgtcgtctcatggttgtgaactccattaagaata 20908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 42500565 - 42500367
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||| ||||| |    |||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||     
T  42500565 tcttcaaatgtatcaaaatatttcttgaaagcatcttgatctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtt 42500466  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  42500465 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaa 42500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 3762062 - 3761964
Alignment:
Q  26 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| | |||||||||||||||  ||| ||||||||||||||||| || || || ||| ||| |||| ||| ||||||| ||| ||||||||||    
T  3762062 cttcaaattcatcaaaatattttttggctgcatcaaactcttggtcaagttacctagaatctttttgtcatcttcccttaatcttccctcaagcatgtg 3761964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 16794516 - 16794600
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 109  Q
    |||||||||||  |||||||||||||||   ||||||||| ||||||||||||  ||||| ||||||| | |||||| |||||||    
T  16794516 tcttcaaatttgtcaaaatattttttggtttcaccaaactattggtcaagtcatgtacaatcttcttgtcgtcctccattaatct 16794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 8194183 - 8194276
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 118  Q
    |||||||||||  |||||||||||||||   |||| |||| ||| ||||||||  ||||| ||||||| | |||||| ||||||| ||||||||    
T  8194183 tcttcaaatttgtcaaaatattttttggtttcaccgaactattgctcaagtcatgtacaatcttcttgtcgtcctccattaatcttcccgcaag 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 7169058 - 7168841
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| | ||||| | ||||||||||||||||  ||||| ||||     
T  7169058 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcatcttgtcgtcctcctttaatctactagcaagaatgta 7168959  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| ||||||||||    
T  7168958 tccttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccactcctttgtttgcctactttgatatccactaaccatgaac 7168859  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  7168858 aagcacccacattttctt 7168841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 35965648 - 35965848
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  35965648 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 35965747  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  35965748 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 35965847  T
Q  225 a 225  Q
    |    
T  35965848 a 35965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 39751931 - 39752148
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| |||   || ||    
T  39751931 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcataaatatg 39752030  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    ||| |||  | ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || |||||||    
T  39752031 tcattctaaagccggttccattgcatggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccaccaatcatgaac 39752130  T
Q  225 atacacctacatattctt 242  Q
    | ||| | |||| |||||    
T  39752131 aaacatccacattttctt 39752148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 45455534 - 45455317
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| |||||||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  45455534 tcttcaaatgtatcaaaatatttcttggaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 45455435  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || ||||||| |  | | |||| | ||||||| ||||||||||||||| |  |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  45455434 tccttctaaagtcggctccatcgcatggttgttaactccattaagaatgtccaatccccattcctttgtttgcttactttgatatccactaatcatgaac 45455335  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  45455334 aagcacccacattttctt 45455317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 14401676 - 14401894
Alignment:
Q  26 cttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcaca--tacaagcttcttgccatcctcctttaatctacccgcaagcatgt 123  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||||||| |  ||||| ||||||| |||| ||| ||||||| || ||||| ||||    
T  14401676 cttcaaattcatcaaaatattttttggtggcaccaaactcttggtcaagtcatatgtacaatcttcttgtcatcatcccttaatcttcctgcaagaatgt 14401775  T
Q  124 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    | | |||||||||| |   ||  || ||||||||||||||||||||||||   ||  || |||| ||||||| |||||||| |||| || | | | ||||    
T  14401776 gccattctaaacttggcaccaattcatggttgtgaactccattaagaatagccaacttccaatcctttgtttccctactaacatatccatgcaacttgaa 14401875  T
Q  224 catacacctacatattctt 242  Q
    || ||||| |||| |||||    
T  14401876 cacacacccacattttctt 14401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 22581048 - 22580914
Alignment:
Q  38 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |     
T  22581048 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtc 22580949  T
Q  138 cgttacatctcttggttgtgaactccattaagaat 172  Q
     | | |||| | ||||||| |||||||||||||||    
T  22580948 ggctccatcgcatggttgtaaactccattaagaat 22580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 43689074 - 43689291
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| || |||||| |   |||||||||||||||| ||||| ||||||| | ||||| ||||||||||| ||||| |||||    
T  43689074 tcttcaaatgtatcaaaatatttcttcgaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcttttaatctaccggcaagaatgtg 43689173  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  43689174 tccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttaaatccccattcctttgtttgcttactttgatatccactaatcatgaac 43689273  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  43689274 aagcacccacattttctt 43689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 43370925 - 43370725
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  43370925 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtg 43370826  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||      | |||| | ||||||||||||||||||||||| || || | | | || ||||||||| ||||  ||||| ||| || |||||||    
T  43370825 tccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttcaaaccccattcctttgtttgcttactttgatatccactaatcatgaac 43370726  T
Q  225 a 225  Q
    |    
T  43370725 a 43370725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 7341237 - 7341039
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  7341237 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 7341138  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7341137 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 8422759 - 8422957
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  8422759 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 8422858  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    | ||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8422859 tcattctaaagccggctccatgggatagttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 30304513 - 30304711
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  30304513 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 30304612  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30304613 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 32377811 - 32378009
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  32377811 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 32377910  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32377911 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 32431768 - 32431966
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  32431768 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 32431867  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32431868 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 1115930 - 1115821
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  1115930 tcttcaattgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtactatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1115831  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  1115830 tccttctaaa 1115821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 2145948 - 2146070
Alignment:
Q  80 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 179  Q
    ||||| ||||||| | ||||||||||||||||| ||||| || |||| ||||||| |  | | |||| | ||||||||||||||||||| ||| || |||    
T  2145948 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatatgtccttctaaagtcggctccatcgcatggttgtgaactccattaaaaatgttcaat 2146047  T
Q  180 ctcgaatcatttgtttgcctact 202  Q
    ||| | |||||||||||| ||||    
T  2146048 ctccattcatttgtttgcttact 2146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 17227 - 17010
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  17227 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacttacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtg 17128  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  17127 tccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccctattcctttgtttgcttactttgatatccactaatcatgaac 17028  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  17027 aagcacccacattttctt 17010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 18607152 - 18606937
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 126  Q
    ||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| |  |||| |||||||    
T  18607152 ttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcgacaagaatgtgtc 18607053  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||     
T  18607052 cttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaa 18606953  T
Q  227 acacctacatattctt 242  Q
     |||| |||| |||||    
T  18606952 gcacccacattttctt 18606937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 24220324 - 24220107
Alignment:
Q  27 ttcaaatttaacaaaatattttttggaagcaccaaa--ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    |||||||||| |||||||||| ||||||||| |  |  |||||||||||||||| || ||  |||||| | |||||||||||||||||  |||| |||||    
T  24220324 ttcaaatttatcaaaatatttcttggaagcatcttatgctcttggtcaagtcacgtataattttcttgtcgtcctcctttaatctaccgacaagaatgtg 24220225  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||      | |||| | |||||||||||| |||||||||| || |||| | | |||||||||| ||||||||||||| ||| ||||||| ||    
T  24220224 tccttctaaagccgactccatcgcatggttgtgaactgcattaagaattttcaatccccattcatttgttttcctactaagatatccactaaccatggac 24220125  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  24220124 aagcacccacattttctt 24220107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 28251054 - 28250856
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  28251054 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 28250955  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  28250954 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 28250856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 31147480 - 31147333
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| ||  ||||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| ||||| |||||    
T  31147480 tcttcaaatgtataaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcattctcctttaatctaccggcaagaatgtg 31147381  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaat 172  Q
    || ||||||| |  | | |||| | |||||||||||||||||||||||    
T  31147380 tccttctaaagtcggctccatcgcatggttgtgaactccattaagaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 29287851 - 29288028
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||    
T  29287851 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtg 29287950  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 202  Q
    || || ||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  29287951 tccttataaagccgactccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 29288028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 1611654 - 1611852
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  1611654 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1611753  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1611754 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 7362299 - 7362137
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| ||||||| |    | |||| | |||||||||||||    
T  7362299 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcattctaaagtcgactccatcgcatggttgtgaactc 7362200  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 225  Q
    |||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7362199 cattaagaatgttcaatccacattcctttgtttgcttactttgatatccactaatcatgaaca 7362137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 21358250 - 21358359
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  21358250 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 21358349  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  21358350 tccttctaaa 21358359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 23962232 - 23962341
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||||| |||||    
T  23962232 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtg 23962331  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  23962332 tccttctaaa 23962341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 34111598 - 34111713
Alignment:
Q  58 ccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtg 157  Q
    ||||||||||||||||||||| ||||| ||||| | |||| ||||||||||| || ||||| || |  | ||||||  || |   |||||| ||||||||    
T  34111598 ccaaactcttggtcaagtcacgtacaatcttctagtcatcttcctttaatcttcctgcaagaattttcccttctaactttggcgccatctcatggttgtg 34111697  T
Q  158 aactccattaagaata 173  Q
    ||||||||||||||||    
T  34111698 aactccattaagaata 34111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 35243636 - 35243544
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  35243636 tggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 35243544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 13387722 - 13387795
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| |||||| ||||||    
T  13387722 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacgaatcatgaa 13387795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 16260 - 16369
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||    
T  16260 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcttcctcctttaatctaccggcaagaatgtg 16359  T
Q  125 tctttctaaa 134  Q
    || |||||||    
T  16360 tccttctaaa 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 2039 - 1841
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  2039 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 1940  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1939 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 12420 - 12203
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| | ||| |||||    
T  12420 tcttcaaatgtatcaaaatatttcttggaagcatctttctcttggtcaagtcacgtacaatcttcttgtcgtcctccattaatctaccggaaagaatgtg 12321  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaac 224  Q
    || |||||||    | | |||  | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||    
T  12320 tccttctaaagccagctccatggcatggttttgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaac 12221  T
Q  225 atacacctacatattctt 242  Q
    |  |||| |||| |||||    
T  12220 aagcacccacattttctt 12203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 33967 - 33769
Alignment:
Q  25 tcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 124  Q
    ||||||| | || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||    
T  33967 tcttcaagtgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtg 33868  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    || |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  33867 tccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 33769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 111 - 290
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | | |||||||| ||||| || ||| ||||||| |||||||    | | |||| | |||||||||||||    
T  111 ctcttggtcaagtcacgtacaatcttcttgtcgttctcctttagtctactcgtaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 210  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  211 cattaagaatgttcaatcaccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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