View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_27 (Length: 427)

Name: NF9985A_low_27
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_27
NF9985A_low_27
[»] chr4 (4 HSPs)
chr4 (20-427)||(54396540-54396947)
chr4 (168-427)||(23587525-23587784)
chr4 (168-427)||(23596377-23596636)
chr4 (168-242)||(35132750-35132824)
[»] chr7 (13 HSPs)
chr7 (183-424)||(8102787-8103028)
chr7 (62-316)||(39985874-39986128)
chr7 (44-427)||(8017081-8017464)
chr7 (171-242)||(17260543-17260614)
chr7 (168-238)||(7877525-7877595)
chr7 (169-238)||(8382669-8382738)
chr7 (168-289)||(8602229-8602350)
chr7 (168-288)||(8590894-8591014)
chr7 (162-242)||(10494160-10494240)
chr7 (181-214)||(6789842-6789875)
chr7 (181-238)||(8636148-8636205)
chr7 (177-301)||(8585507-8585631)
chr7 (162-242)||(13333242-13333322)
[»] chr1 (1 HSPs)
chr1 (165-238)||(4678347-4678420)
[»] chr2 (6 HSPs)
chr2 (168-304)||(17716485-17716621)
chr2 (246-379)||(5445621-5445754)
chr2 (161-237)||(12234996-12235072)
chr2 (168-235)||(12245198-12245265)
chr2 (168-214)||(11999724-11999770)
chr2 (177-214)||(7542556-7542593)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 54396947 - 54396540
Alignment:
Q  20 gtttaaagtcgttccaggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396947 gtttaaagtcgttccaggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtg 54396848  T
Q  120 ttgatcaagatgagagaagttgctgaagcttttcttggtcatccagtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54396847 ttgatcaagatgagagaagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaag 54396748  T
Q  220 ctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396747 ctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttc 54396648  T
Q  320 gagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396647 gagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagct 54396548  T
Q  420 actgctgg 427  Q
    ||||||||    
T  54396547 actgctgg 54396540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 168 - 427
Target Start/End: Original strand, 23587525 - 23587784
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 267  Q
    |||||||  ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||  ||||| ||  | ||||||||||| ||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 23587624  T
Q  268 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 367  Q
    ||||||| ||||| |||||||| |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23587625 ttaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgttcttattttcgatcttggtggtggaac 23587724  T
Q  368 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctgg 427  Q
    ||| |||||||| || ||||||||||| ||||| ||||| || || |||||||| |||||    
T  23587725 ttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctgg 23587784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 168 - 427
Target Start/End: Original strand, 23596377 - 23596636
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 267  Q
    |||||||  ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||||||||||  ||||| ||  | |||||| |||| ||||    
T  23596377 aagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaatta 23596476  T
Q  268 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 367  Q
    |||| ||||| |||||||| || |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23596477 ttaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaac 23596576  T
Q  368 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctgg 427  Q
    ||| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| |||||    
T  23596577 ttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctgg 23596636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 35132824 - 35132750
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 242  Q
    |||||||  ||||||||||| ||||||||||| | ||||||||||||  |||| || | ||||||||||||||||    
T  35132824 aagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctatt 35132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 424
Target Start/End: Complemental strand, 8103028 - 8102787
Alignment:
Q  183 actgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattattaatgagcctactg 282  Q
    ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||| |||  | ||||| ||||| ||||| |||||||||||||| ||||    
T  8103028 actgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaattattaatgagccaactg 8102929  T
Q  283 ctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactttcgatgtttctct 382  Q
    ||||||| ||||| || ||| | || || || ||  | ||    || ||  |||||||| | || ||||| ||||| ||||| ||||| ||||| || ||    
T  8102928 ctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtacttttgatgtgtcact 8102829  T
Q  383 tcttactattgaagaagggatcttcgaagtgaaagctactgc 424  Q
    ||||||||||||||| || || || ||||| || ||||||||    
T  8102828 tcttactattgaagagggtatatttgaagttaaggctactgc 8102787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 316
Target Start/End: Complemental strand, 39986128 - 39985874
Alignment:
Q  62 tgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcat 161  Q
    |||||| |||||||||||||| ||| ||||||| || || || || ||||| |||||| | || |||||| | ||  |||| ||||| |  ||||||  |    
T  39986128 tgttaactacaaaggtgaagataaggaatttgctgccgaagagatctcttccatggtgctaatgaagatgcgtgagattgccgaagcgtaccttggttct 39986029  T
Q  162 ccagtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttga 261  Q
     |  | ||||||| |||||||||||| |||||||| || ||||| || || ||||||||||| || |||||||| | |||| | ||| | |||||  ||     
T  39986028 gccattaagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgc 39985929  T
Q  262 ggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagc 316  Q
    | ||||| |||||||| ||||||||||| |||||||||||| | || ||||||||    
T  39985928 gaattatcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagc 39985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 427
Target Start/End: Original strand, 8017081 - 8017464
Alignment:
Q  44 tgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgct 143  Q
    |||||| || ||||| | |||||| ||||| ||||| || ||| ||||||| || ||||||||||| || |||||  | || |||||| | ||  |||||    
T  8017081 tgaaaagccaatgattggtgttaactacaagggtgaggacaagcaatttgctgctgaggaaatttcgtctatggtactcataaagatgcgtgagattgct 8017180  T
Q  144 gaagcttttcttggtcatccagtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctattt 243  Q
    |||||||  || |||    | ||||||||||  |||||||| ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||  |||     
T  8017181 gaagcttacctcggttcaactgtgaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattg 8017280  T
Q  244 cgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgct 343  Q
    | ||  | ||||| ||||| ||||| || ||||| || ||||| || ||||| || ||  | || || || ||| | ||    |||||  |||| ||| |    
T  8017281 caggactcaatgttttgagaattatcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgtt 8017380  T
Q  344 tatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctgg 427  Q
     || ||||||||||||||||| ||||| ||||| |||||||||||||||||||| || || || ||||| || |||||||||||    
T  8017381 gatctttgacttgggaggtggtacttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctgg 8017464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 17260614 - 17260543
Alignment:
Q  171 aatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 242  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  |||| || | ||||||||||| ||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttatt 17260543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 7877525 - 7877595
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 238  Q
    |||||||  ||||||||||| || |||||||||||||||||||||||  |||| || ||||||||||||||    
T  7877525 aagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgc 7877595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 8382669 - 8382738
Alignment:
Q  169 agaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 238  Q
    ||||||| |||||||| || ||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  8382669 agaatgtagttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgc 8382738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 8602350 - 8602229
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 267  Q
    |||||||  ||||||||||| || |||||||| ||||||||||| ||  |||| || |||||||||||||| ||| | ||| | |||||  || |||| |    
T  8602350 aagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggataa 8602251  T
Q  268 ttaatgagcctactgctgctgc 289  Q
    | |||||||| ||||| |||||    
T  8602250 tcaatgagccaactgcagctgc 8602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 288
Target Start/End: Complemental strand, 8591014 - 8590894
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 267  Q
    |||||||  ||||||||||| || |||||||| |||||||||||  |  ||||||| |||||||||||||  ||| | || ||||||||  || |||| |    
T  8591014 aagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgtaatgcggataa 8590915  T
Q  268 ttaatgagcctactgctgctg 288  Q
    ||||||| || ||||| ||||    
T  8590914 ttaatgaaccaactgccgctg 8590894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 10494160 - 10494240
Alignment:
Q  162 ccagtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 242  Q
    ||||| ||||||| |||||||||||| || ||||| ||||| |||||||||||  | ||||| |  |||||||||||||||    
T  10494160 ccagtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctatt 10494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 6789875 - 6789842
Alignment:
Q  181 ttactgttcctgcttatttcaatgattctcaacg 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  6789875 ttactgtgcctgcttatttcaatgattctcaacg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 8636148 - 8636205
Alignment:
Q  181 ttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 238  Q
    ||||||| || |||||||||||||||||||| ||| || | || ||||||||||||||    
T  8636148 ttactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgc 8636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 301
Target Start/End: Original strand, 8585507 - 8585631
Alignment:
Q  177 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattattaatgagc 276  Q
    ||||| ||||| ||||||||||||||||||||||| ||  |||| || |  ||||||||||| ||| | ||  | |||||  ||||||| || ||||| |    
T  8585507 gttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatcaatgaac 8585606  T
Q  277 ctactgctgctgcaattgcttatgg 301  Q
    | |||||||| || ||||| |||||    
T  8585607 ccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 13333242 - 13333322
Alignment:
Q  162 ccagtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 242  Q
    ||||| |||||||  ||||||||||| || ||||| |||||||||||||| ||  | || || | ||||||||||||||||    
T  13333242 ccagtcaagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctatt 13333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 4678347 - 4678420
Alignment:
Q  165 gtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 238  Q
    ||||||||||| ||||||||||| ||||| || |||||||||||||||||  ||||||| | ||||||||||||    
T  4678347 gtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgc 4678420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 304
Target Start/End: Original strand, 17716485 - 17716621
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 267  Q
    |||||||  ||||||||||| |||||||| || |||  ||||||  | |||||||| ||  |||||||||||||| | ||| | ||| |  |||| ||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  268 ttaatgagcctactgctgctgcaattgcttatggttt 304  Q
    |||||||||| |||||||| || ||||||||||||||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttt 17716621  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 379
Target Start/End: Original strand, 5445621 - 5445754
Alignment:
Q  246 ggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgctta 345  Q
    ||||| |||||| ||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||||   | |||| |||| ||  |||| ||||||     
T  5445621 ggttttaatgtgatgaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttg 5445720  T
Q  346 tttttgacttgggaggtggaactttcgatgtttc 379  Q
    | |||||  | || |||||||| |||||||||||    
T  5445721 tgtttgatcttggtggtggaacattcgatgtttc 5445754  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 12235072 - 12234996
Alignment:
Q  161 tccagtgaagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 237  Q
    |||||| |||||||  |||||||| || ||||||||||||||||||||||||||  |||| || | |||||||||||    
T  12235072 tccagttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtg 12234996  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 12245198 - 12245265
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctgg 235  Q
    ||||||| |||||||||||| ||||||||||| | ||||||||| ||  |||| |||| |||||||||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctgg 12245265  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 11999770 - 11999724
Alignment:
Q  168 aagaatgttgttgttactgttcctgcttatttcaatgattctcaacg 214  Q
    |||||||||||||||||||| || |||||||| | ||||||||||||    
T  11999770 aagaatgttgttgttactgtaccagcttattttagtgattctcaacg 11999724  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 7542593 - 7542556
Alignment:
Q  177 gttgttactgttcctgcttatttcaatgattctcaacg 214  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  7542593 gttgttactgtacctgcttattttaatgattctcaacg 7542556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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