View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_278 (Length: 250)

Name: NF9985A_low_278
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_278
NF9985A_low_278
[»] chr1 (7 HSPs)
chr1 (9-153)||(13244107-13244251)
chr1 (158-250)||(13244450-13244542)
chr1 (152-248)||(13080788-13080884)
chr1 (84-153)||(12963575-12963644)
chr1 (79-146)||(19278827-19278894)
chr1 (9-65)||(19278730-19278786)
chr1 (150-206)||(19279089-19279145)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagaagaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagaacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 13244450 - 13244542
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtacaaccttaaggctatttcctcctctggcatttcagcacaagcatgctatcaaatctg 250  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||||||||||||||||||||   |||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctg 13244542  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 13080788 - 13080884
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtacaaccttaaggctatttcctcctctggcatttcagcacaagcatgctatcaaatc 248  Q
    |||||||||||||||| ||||||||||||||||||||||||  | |||||||||||| |||| || | |||||||||||||||  ||||||||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatc 13080884  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 19278730 - 19278786
Alignment:
Q  9 gagaagaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtata 65  Q
    ||||||||||||| || ||| ||||||||||||||| | |||||| |||||||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtata 19278786  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 19279089 - 19279145
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtacaaccttaaggct 206  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggct 19279145  T

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