View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_281 (Length: 249)
Name: NF9985A_low_281
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_281 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 34571157 - 34570946
Alignment:
| Q |
18 |
gacatcagatcctcaatggaatggtttgtccttctgacttgccacttaattgctaaaaaa-ttgtttcaatttgaatgtttatttacttatattctgtat |
116 |
Q |
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| T |
34571157 |
gacatcagatcctcaatggaatggtttgtccttctgacttgccacttaattgctaaaaaaattgtttcaatttgaatgtttctttacttatattctgtat |
34571058 |
T |
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| Q |
117 |
tggttttatatactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571057 |
tggttttatatactaatatgcagagatattagagtttgatgctatggaagaaccaccatcagttttgtatgtggaagtttttgattttgacggtccattt |
34570958 |
T |
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| Q |
217 |
gaccaggatgtt |
228 |
Q |
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| T |
34570957 |
gaccaggatgtt |
34570946 |
T |
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