View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_285 (Length: 249)
Name: NF9985A_low_285
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_285 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 37427683 - 37427911
Alignment:
| Q |
13 |
agacaacataaaatagaaaggaagaaaagcccttttccgaagaaatcaaatgtgaggcaataaccaatacataatatctttagtttgattcaacaactca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37427683 |
agacaacataaaatagaaaggaagaaaagcccttttccgaagaaatcaaatgtgaggcaataaccaatacataatatctttagtttgtttcaacaactca |
37427782 |
T |
|
| Q |
113 |
cttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatcgtatatagcaaaaagtcctagctcttgtcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37427783 |
cttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatcgtatatagcaaaaagtcctagctcttgtcc |
37427882 |
T |
|
| Q |
213 |
tttgaaatggacaatttttgctacgtgat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37427883 |
tttgaaatggacaatttttgctacgtgat |
37427911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 1664706 - 1664573
Alignment:
| Q |
107 |
aactcacttccttcaagatattagaaaagagatgcttttgcaaatatgacggtacactgtctcccaggtgtccatcgtatatagcaaaaagtcctagctc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| | || ||| |||| ||| ||||||||| |||||||||||||||| | ||| |
|
|
| T |
1664706 |
aactcacttccttcaagatattagaaaagagatgtttttgtaaataggcaggcacagtgtcacccgagtgtccatcaaatatagcaaaaagtcccaactc |
1664607 |
T |
|
| Q |
207 |
ttgtcctttgaaatggacaatttttgctacgtga |
240 |
Q |
| |
|
| | || ||||| ||||| ||||| || |||||| |
|
|
| T |
1664606 |
tcgcccgttgaactggacgattttcgcaacgtga |
1664573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University