View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_29 (Length: 421)
Name: NF9985A_low_29
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 53330029 - 53329816
Alignment:
| Q |
20 |
tcaattagttggctaacacatgcatctgcctccaaaacattgacgggactgcacactttaaaacaagccatgttaggtaaccaaccttccttccaaataa |
119 |
Q |
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| T |
53330029 |
tcaattagttagctaacacatgcatctgcctccaaaacattgactggactggacactttaaaacaagccatgttaggtaaccaaccttcctgacaaataa |
53329930 |
T |
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| Q |
120 |
gcacctgctgtctgttgccaattgaccatctcggacccaattcaatcaccttctttgcactaaaaatgccgtctgttggattactaatcaagatggtcac |
219 |
Q |
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| T |
53329929 |
gcacctgctgtctgttgccaattgaccatctcggacccaattcaatcaccttctttgcactaaacatgccgtctgttggattactaatcaagatggtcac |
53329830 |
T |
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| Q |
220 |
ttcctagtggaaac |
233 |
Q |
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| T |
53329829 |
ttcctagtggaaac |
53329816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 256 - 415
Target Start/End: Complemental strand, 53329772 - 53329613
Alignment:
| Q |
256 |
gcctccaaggccaaattcacatagatactattgataaagtagtattgtctaagccgaatgattgcaactttgtaaggtattccattaaaagatataaaaa |
355 |
Q |
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| T |
53329772 |
gcctccaaggccaaattcacatagatactattgataaagtagtattgtctaagccgaatgattgtaactttgtaaggtattccattaaaagatataaaaa |
53329673 |
T |
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| Q |
356 |
tgttgctgctcatggagttagcaaagctatgtggttcaactttcgggtaggatttgttcc |
415 |
Q |
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| T |
53329672 |
tgttgctgctcgtggagttagcaaagctatgtggttcaactttcgggtaggatttgttcc |
53329613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 53329811 - 53329778
Alignment:
| Q |
147 |
atctcggacccaattcaatcaccttctttgcact |
180 |
Q |
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| T |
53329811 |
atctcggacccaattcaatcaccttctttgcact |
53329778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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