View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_290 (Length: 249)
Name: NF9985A_low_290
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_290 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 37766010 - 37766244
Alignment:
| Q |
9 |
gctggtcggacgagatttcggcagggtcctaacaaccatgagaggagccagaggctaccttgctccggagaggatttctggcgtggctattacagccaaa |
108 |
Q |
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| T |
37766010 |
gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa |
37766109 |
T |
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| Q |
109 |
gccgatgcttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctacct |
208 |
Q |
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| T |
37766110 |
gctgatgtttatagctacggaatgatgcttttcgaggttgtatcgggtaggaggaactccgatccatcagaagatggtcaagttactttctttcctacct |
37766209 |
T |
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| Q |
209 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
243 |
Q |
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| T |
37766210 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
37766244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 37799651 - 37799519
Alignment:
| Q |
94 |
gctattacagccaaagccgatgcttatagctacggaatgatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagtta |
193 |
Q |
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| T |
37799651 |
gctatcacagccaaatctgatgtttacagttatggaatgatgctttttgaggttgtatcaggtaaaaggaattctgatccatctgcagatgaccaaaata |
37799552 |
T |
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| Q |
194 |
ctttctttcctaccttagctgcaaaagtagtta |
226 |
Q |
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| T |
37799551 |
ctttctttccaaccttggctgctacagtagtta |
37799519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 16221 - 16407
Alignment:
| Q |
32 |
gggtcctaacaaccatgagaggagccagaggctaccttgctccggagaggatttctggcgtggctattacagccaaagccgatgcttatagctacggaat |
131 |
Q |
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| T |
16221 |
gggtcctcactaccatgagaggaacaagaggctatctagctccagagtggatttcaggagttgctataaccgctaaagccgatgtttacagctacggaat |
16320 |
T |
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| Q |
132 |
gatgcttttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagttactttctttcctaccttagctgcaaa |
218 |
Q |
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| T |
16321 |
gatgcttttcgagctagtgtcaggtagaagaaactccgatccttctgaagatggccatgttagattctttcctaccttagctgcaaa |
16407 |
T |
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