View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_291 (Length: 249)
Name: NF9985A_low_291
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_291 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 50088168 - 50088393
Alignment:
| Q |
17 |
gaatgttccatgaaagtagcaaaagggacacgacatgtaacaggtggtttgaaacaagcatagtcaacgaggtagattgtgcgtggttttgacatgaaat |
116 |
Q |
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| T |
50088168 |
gaatgttccatgaaagtagcaaaagggacacgacatgtaacaggtggtttgaaacaagcatagtcaacgaggtagattgtgcgtggttttgacatgaaat |
50088267 |
T |
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| Q |
117 |
aaacagtggctataaaaatgacaaggaaagaagaacataggatttgaacaaggtttaagtttagtgagttccaaagattgaggatttcatttgggcctaa |
216 |
Q |
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| T |
50088268 |
aaacagtggctataaaaatgacaaggaaagaagaacataggatttgaacaaggtttaagtttagtgagttccaaagattgaggatttcatttgggcctaa |
50088367 |
T |
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| Q |
217 |
acgtactaattcaatggaaacaccaa |
242 |
Q |
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| T |
50088368 |
acgtattaattcaatggaaacaccaa |
50088393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 23272432 - 23272526
Alignment:
| Q |
20 |
tgttccatgaaagtagcaaaagggacacgacatgtaacaggtggtttgaaacaagcatagtcaacgaggtagattgtgcgtggttttgacatgaa |
114 |
Q |
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| T |
23272432 |
tgttccatgaaagtagcgaaagggacacgacaagtaatcggcggtttgaagcaggcataatcgactaggtagattgtgcgtggctttaacatgaa |
23272526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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