View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_297 (Length: 247)
Name: NF9985A_low_297
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_297 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 17435600 - 17435821
Alignment:
| Q |
19 |
atgcaagtatatgatcaagattggatatatgaaagaatattgatataaaatctgacaccaaattgaaattttgcgtcatatgaattgtaaaactgaagaa |
118 |
Q |
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| T |
17435600 |
atgcaagtatatgatcaagattggatatatgaaaggatattaatataaaatctgacaccaaattgagattttgcgtcatatgaattgtaaaactgaagaa |
17435699 |
T |
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| Q |
119 |
attctcagcaatacaagaaacaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagttaggctttgtttgacataaaata |
218 |
Q |
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| T |
17435700 |
attctcagctatataacaaacaagagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagttaggctttgtttgacataaaata |
17435799 |
T |
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| Q |
219 |
attgagtgtgtcggtattattc |
240 |
Q |
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| T |
17435800 |
attgagtgtgtcggtattattc |
17435821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 17456753 - 17456896
Alignment:
| Q |
97 |
tatgaattgtaaaactgaagaaattctcagcaatacaagaaacaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagtt |
196 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17456753 |
tatgaattgtaaaactggagaaattctcagcaatacaagaaacaaaagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagtt |
17456852 |
T |
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| Q |
197 |
aggctttgtttgacataaaataattgagtgtgtcggtattattc |
240 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
17456853 |
aggctttgtttgacataaaataattgagtgtgttgatattattc |
17456896 |
T |
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