View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_298 (Length: 247)

Name: NF9985A_low_298
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_298
NF9985A_low_298
[»] chr4 (4 HSPs)
chr4 (101-239)||(37252927-37253065)
chr4 (104-238)||(37232684-37232815)
chr4 (108-186)||(37257059-37257137)
chr4 (113-189)||(37244881-37244957)
[»] chr6 (3 HSPs)
chr6 (107-186)||(14316682-14316761)
chr6 (107-186)||(14253954-14254033)
chr6 (107-186)||(14248144-14248223)
[»] scaffold0902 (1 HSPs)
scaffold0902 (107-184)||(3200-3277)
[»] scaffold1652 (1 HSPs)
scaffold1652 (106-181)||(595-670)
[»] scaffold1176 (1 HSPs)
scaffold1176 (107-186)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (145-185)||(268-308)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 37252927 - 37253065
Alignment:
Q  101 ctcgagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgctttcggacgg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||    
T  37252927 ctcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaagg 37253026  T
Q  201 tccttcagcaggaggagtggagatggaggatggagtaag 239  Q
    |||||| | |||||||||||| ||||| |||||||||||    
T  37253027 tccttcggaaggaggagtggaaatggatgatggagtaag 37253065  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 37232684 - 37232815
Alignment:
Q  104 gagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgctttcggacggtcc 203  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||   || ||| |    
T  37232684 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 37232780  T
Q  204 ttcagcaggaggagtggagatggaggatggagtaa 238  Q
    ||||||||||||||||||||| || ||||||||||    
T  37232781 ttcagcaggaggagtggagatcgatgatggagtaa 37232815  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 37257059 - 37257137
Alignment:
Q  108 aactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    ||||||||| | ||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||| |||||||||    
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcg 37257137  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 37244881 - 37244957
Alignment:
Q  113 tctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccg 189  Q
    |||||| ||||||| | || ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccg 37244957  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 14316682 - 14316761
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    |||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  14316682 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcg 14316761  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 14253954 - 14254033
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    |||||||||| | ||||||||| || ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcg 14254033  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 14248144 - 14248223
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    |||||||||| | ||||||||| ||  | |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  14248144 taactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

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Target: scaffold0902 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 3200 - 3277
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcgg 184  Q
    |||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  3200 taactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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Target: scaffold1652 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 670 - 595
Alignment:
Q  106 gtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaag 181  Q
    ||||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  670 gtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

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Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  107 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 186  Q
    |||||||||| | ||||||||| ||   ||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

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Target: scaffold1801 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 308 - 268
Alignment:
Q  145 acagcagcagatccggcaacggtaaatctgttcaaagcggc 185  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  308 acagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

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