View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_300 (Length: 246)
Name: NF9985A_low_300
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_300 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 32656303 - 32656452
Alignment:
| Q |
21 |
attcacacaacttattaaaattttagcgcaatgagaaaatggaagaggtagttttcttgatcaagcaaagcaactcatgacgagtaccattctcaataga |
120 |
Q |
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| T |
32656303 |
attcacacaacttattaaaattttagcgcaatgagaaaatggaagaggtagttttcttgatcaagcaaagcaactcatgacgagtaccattctcaataga |
32656402 |
T |
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| Q |
121 |
actacattgtgaggaataagaccactatagtatacaacaagcacattcag |
170 |
Q |
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| T |
32656403 |
actacattgtgaggaataagaccactatagtatacaacaagcacattcag |
32656452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 32653625 - 32653722
Alignment:
| Q |
50 |
aatgagaaaatggaagaggtagttttcttgatcaagcaaagcaactcatgacgagtaccattctcaatagaactacattgtgaggaataagaccactata |
149 |
Q |
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| T |
32653625 |
aatgagaaaatggaagaggtgattttcttgat------aagcaattcgtgacga--accattcttagtagaaccacattgtgaggaataagaccactata |
32653716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 32620558 - 32620606
Alignment:
| Q |
106 |
accattctcaatagaactacattgtgaggaataagaccactatagtata |
154 |
Q |
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| T |
32620558 |
accattcttagtagaaccatattgtgaggaagaagaccactatagtata |
32620606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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