View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_303 (Length: 246)
Name: NF9985A_low_303
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_303 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 54793599 - 54793816
Alignment:
| Q |
12 |
aagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54793599 |
aagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctct |
54793698 |
T |
|
| Q |
112 |
gtttggcaggagaatgtgaaaaattcagcatggcaccctcttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54793699 |
gtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgt |
54793798 |
T |
|
| Q |
212 |
ttttgaagtagctatgct |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
54793799 |
ttttgaagtagctatgct |
54793816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 52286280 - 52286496
Alignment:
| Q |
12 |
aagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctct |
111 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52286280 |
aagaatgggagaccttgatcagaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctct |
52286379 |
T |
|
| Q |
112 |
gtttggcaggagaatgtgaaaaattcagcatggcaccctcttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgt |
211 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
52286380 |
ttttggcaggagaatgtgaagaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctgtgt |
52286479 |
T |
|
| Q |
212 |
ttttgaagtagctatgc |
228 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
52286480 |
ttttgcagtagttatgc |
52286496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 54775932 - 54775823
Alignment:
| Q |
120 |
ggagaatgtgaaaaattcagcatggcaccctcttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
|
| Q |
220 |
tagctatgct |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
54775832 |
tagctatgct |
54775823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 801450 - 801656
Alignment:
| Q |
16 |
atgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgttt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | |||||||||||||||| |||| || ||||||||||| |||||| | |||||||||||| | | |
|
|
| T |
801450 |
atgggagaccttgaccagaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttat |
801546 |
T |
|
| Q |
116 |
ggcaggagaatgtgaaaaattcagcatggcaccctcttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttttt |
215 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||||| ||||||||||||| |||||||| | | |||||||||| ||||| |||||||||||||||| |
|
|
| T |
801547 |
ggcaggaaaatgtgaagaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgttttt |
801646 |
T |
|
| Q |
216 |
gaagtagcta |
225 |
Q |
| |
|
| ||| |||| |
|
|
| T |
801647 |
ggagtggcta |
801656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 54775982 - 54775950
Alignment:
| Q |
12 |
aagaatgggagaccttgatgagaaggtttttgt |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
54775982 |
aagaatgggagaccttgatgagaaggtttttgt |
54775950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University