View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_304 (Length: 246)
Name: NF9985A_low_304
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_304 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 40093770 - 40093978
Alignment:
| Q |
1 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40093770 |
tcacagggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgtcgattgcacagactcatg |
40093869 |
T |
|
| Q |
101 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40093870 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagttt |
40093969 |
T |
|
| Q |
201 |
aaacatgag |
209 |
Q |
| |
|
||||||||| |
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|
| T |
40093970 |
aaacatgag |
40093978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 40063139 - 40063346
Alignment:
| Q |
1 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063139 |
tcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
40063238 |
T |
|
| Q |
101 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagggttt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
40063239 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaaaaagagttt |
40063338 |
T |
|
| Q |
201 |
aaacatga |
208 |
Q |
| |
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|||||||| |
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|
| T |
40063339 |
aaacatga |
40063346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 40081490 - 40081694
Alignment:
| Q |
1 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
40081490 |
tcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactcatg |
40081589 |
T |
|
| Q |
101 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagggttt |
200 |
Q |
| |
|
|||||| |||||||||| |||| | | ||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| || || |||| |
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|
| T |
40081590 |
caactatagaggaccttatacttcatctaaatgtcgcaagaactgtggaaaaccgtcacagacattgtaagtgttgcaaattttcaataaaaaaaagttt |
40081689 |
T |
|
| Q |
201 |
aaaca |
205 |
Q |
| |
|
||||| |
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|
| T |
40081690 |
aaaca |
40081694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 22012707 - 22012538
Alignment:
| Q |
1 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| | || | ||| | | || || |||||||| |
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|
| T |
22012707 |
tcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggcgatactggccaacatacatctctccgaattctggctgtactgactcatg |
22012608 |
T |
|
| Q |
101 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaa |
170 |
Q |
| |
|
||| || |||||| | | | || | ||||||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
22012607 |
caattatagaggaacatattctgcatccaaatgcctcaagaattgtggaaaaccatcacagacattgtaa |
22012538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
9 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
49 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||| |
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| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
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