View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_305 (Length: 246)
Name: NF9985A_low_305
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_305 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 33025958 - 33026190
Alignment:
| Q |
14 |
gaagacaagaggagaaacatgaaagaagtaaaattgatgcacatgtgaatgatggagatagatcaacacattctaatcaattttttgaacacaattcagc |
113 |
Q |
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| T |
33025958 |
gaagacaagaggagaaacatgaaagaagtaaaattgatgcacatgtgaatgatggaaatagatcaacacattctaatcaattttttgaacacaattcagc |
33026057 |
T |
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| Q |
114 |
ttatggttcttcaagtagttgtagagaggaacttaagaaagtgattaaggagagtttggttcgacaaaatctattccaaagcacaagcacttctgaagga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33026058 |
ttatggttcttcaagtagttgtagagaggaacttaagaaagtgattaaggagagtttggttcgacaaaatctattccaaagcacaagtacttctgaagga |
33026157 |
T |
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| Q |
214 |
ttggattcagattcagcagaattcccttctaca |
246 |
Q |
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|||||||||| |||||||| ||||||||||||| |
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| T |
33026158 |
ttggattcagcttcagcagcattcccttctaca |
33026190 |
T |
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