View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_309 (Length: 246)

Name: NF9985A_low_309
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_309
NF9985A_low_309
[»] chr7 (3 HSPs)
chr7 (1-232)||(3437088-3437319)
chr7 (1-126)||(14798952-14799077)
chr7 (1-126)||(15245944-15246069)
[»] chr3 (3 HSPs)
chr3 (1-224)||(46240160-46240383)
chr3 (2-222)||(23541555-23541775)
chr3 (51-223)||(30038134-30038306)
[»] chr8 (1 HSPs)
chr8 (65-223)||(3921199-3921357)
[»] chr5 (1 HSPs)
chr5 (65-223)||(29878251-29878409)
[»] chr4 (3 HSPs)
chr4 (65-223)||(6869045-6869201)
chr4 (68-223)||(4497222-4497377)
chr4 (1-114)||(11318291-11318404)
[»] scaffold0300 (1 HSPs)
scaffold0300 (68-223)||(18134-18289)
[»] chr6 (1 HSPs)
chr6 (68-223)||(24676042-24676197)
[»] chr1 (1 HSPs)
chr1 (120-223)||(36915336-36915439)
[»] scaffold0140 (1 HSPs)
scaffold0140 (2-102)||(40053-40153)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-114)||(43494-43607)
[»] chr2 (1 HSPs)
chr2 (1-114)||(18131561-18131674)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3437319 - 3437088
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3437319 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtacttt 3437220  T
Q  101 cctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437219 cctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtat 3437120  T
Q  201 tcatatcagatcagcagaaggtaagtgatgtc 232  Q
    ||||||||||||||||||||||||||| ||||    
T  3437119 tcatatcagatcagcagaaggtaagtgttgtc 3437088  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 14799077 - 14798952
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||| | |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  14799077 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 14798978  T
Q  101 cctcttgcatttggcattgttgaaac 126  Q
    ||| | || |||||  ||||||||||    
T  14798977 cctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 15246069 - 15245944
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    |||||| ||||||||||| |||||||| ||||| || |||||||| ||| | |||||| |  |  | ||||| || ||||| |||||||| || ||||||    
T  15246069 atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt 15245970  T
Q  101 cctcttgcatttggcattgttgaaac 126  Q
    ||| | || |||||  ||||||||||    
T  15245969 cctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 46240160 - 46240383
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46240160 atgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtacttt 46240259  T
Q  101 cctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240260 cctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtat 46240359  T
Q  201 tcatatcagatcagcagaaggtaa 224  Q
    ||||||||||||||||||||||||    
T  46240360 tcatatcagatcagcagaaggtaa 46240383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 23541555 - 23541775
Alignment:
Q  2 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 101  Q
    ||||| |||||| ||||||| ||||| |||||| |||||||||||||| |||||||||| || || | ||||||||| |||||||||||||| || ||||    
T  23541555 tgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttc 23541654  T
Q  102 ctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtatt 201  Q
    |  | |||||||| || || |||||  |||| |||| ||||||||| |||||||||||| |  |  ||||||||||||| |  ||||  |||||||| ||    
T  23541655 cattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtctt 23541754  T
Q  202 catatcagatcagcagaaggt 222  Q
    |||||||||||| ||||||||    
T  23541755 catatcagatcaacagaaggt 23541775  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 30038306 - 30038134
Alignment:
Q  51 ggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtg 150  Q
    ||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||||| ||    
T  30038306 ggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaatg 30038207  T
Q  151 gttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    ||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038206 gttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
Q  65 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 164  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  3921357 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 3921258  T
Q  165 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    || |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921257 tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 29878251 - 29878409
Alignment:
Q  65 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 164  Q
    |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||  ||||||    
T  29878251 attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc 29878350  T
Q  165 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    || |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878351 tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 6869045 - 6869201
Alignment:
Q  65 attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc 164  Q
    |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||| ||||||||| ||||||    
T  6869045 attgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgc 6869144  T
Q  165 tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    || |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869145 tgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
Q  68 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 167  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||||||||||| ||||| |||||| || ||     
T  4497377 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga 4497278  T
Q  168 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497277 tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||| | || ||||| || ||||| ||||  |||||||||||||| || || |||    
T  11318404 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt 11318305  T
Q  101 cctcttgcatttgg 114  Q
    ||| | ||||||||    
T  11318304 cctttagcatttgg 11318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 223
Target Start/End: Original strand, 18134 - 18289
Alignment:
Q  68 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 167  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||||||||||| ||||| |||||| || ||     
T  18134 gctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga 18233  T
Q  168 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18234 tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 24676197 - 24676042
Alignment:
Q  68 gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt 167  Q
    |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||||||||||| ||||| |||||| || ||     
T  24676197 gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga 24676098  T
Q  168 tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 223  Q
    || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676097 tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  120 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 219  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  220 ggta 223  Q
    ||||    
T  36915436 ggta 36915439  T

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Target: scaffold0140 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  2 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 101  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||| | |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  102 c 102  Q
    |    
T  40053 c 40053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 43494 - 43607
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||| | || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  43494 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 43593  T
Q  101 cctcttgcatttgg 114  Q
    ||| | ||||||||    
T  43594 cctttagcatttgg 43607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
Q  1 atgtaggccatttattggggttgatggctgtcatctaaagacaaagtattggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt 100  Q
    |||||| || ||||| || |||||||| |||||||||||||| |  ||| | || ||||| || ||||| ||||| |||| ||||||||| || || |||    
T  18131674 atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt 18131575  T
Q  101 cctcttgcatttgg 114  Q
    ||| | ||||||||    
T  18131574 cctttagcatttgg 18131561  T

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