View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_31 (Length: 421)
Name: NF9985A_low_31
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 47680925 - 47680513
Alignment:
| Q |
1 |
gtatcattaattccaaatataaatgcaataccatatactaccaaatatacatggatgtacaaagtaatagctacattatacactatcgccaaaaaatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680925 |
gtatcattaattccaaatataaatgcaataccatatactaccaattatacatggatgtacaaagtaatagctacattatacactatcgccaaaaaatcca |
47680826 |
T |
|
| Q |
101 |
ttattgttgtatagtattgatgatcatcaatgaattgagtcaaaccctaataaacgcaattggtttgtgtctcggtttttcaaacatgatgggtggttag |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680825 |
ttattgttgta--gtattgatgatcatcaatgaattgagtcaaaccctaataaacgcaattggtttgtgtctcggtttttcaaacatgatgggtggttag |
47680728 |
T |
|
| Q |
201 |
ggtgtcacaacacaattggtttctgtgtttaaaaattcgaatcctgtcctttccatc---------ctttagggtagccccccatgccttgctgtcactg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47680727 |
ggtgtcacaacacaattggtttctgtgtttaaaaattcgaatcctgtcttttccatccttgcttttctttagggtagccccccatgccttgctgtcactg |
47680628 |
T |
|
| Q |
292 |
catgtaggtccttcattctctgctccttcaaccacacatacatagatcaatcacgcgcctctctcattatgcttgcttagggatcatcttgccctaattg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680627 |
catgtaggtccttcattctctgctccttcaaccacacatacatagatcaatcacgcgcctctctcattatgcttgcttagggatcatcttgccctaattg |
47680528 |
T |
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| Q |
392 |
aacttactttgtctt |
406 |
Q |
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|||||| |||||||| |
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| T |
47680527 |
aacttaatttgtctt |
47680513 |
T |
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