View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_312 (Length: 245)
Name: NF9985A_low_312
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_312 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 1841338 - 1841565
Alignment:
| Q |
7 |
acactgtgaactgcttctacctctcttcactctattttgttgatttattttcatttcactcttttgattactttcatggctacgtttattattcttataa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1841338 |
acactgtgaactgcttctacctctcttcactccattttgttgatttattttcatttcactcttttgattactttcatggctacgtttat---tcttataa |
1841434 |
T |
|
| Q |
107 |
ttaggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccttgtt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1841435 |
ttaggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccatgtt |
1841534 |
T |
|
| Q |
207 |
cttgttcttgttcttgtggttgattttgttg |
237 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
1841535 |
cttgttcttgttcttgtggttgatgttgttg |
1841565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 1824138 - 1824265
Alignment:
| Q |
110 |
ggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttctccgaggaacctttttcgatttcaaaccttgttctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| || |
|
|
| T |
1824138 |
ggtgtagctggtatcatagttgaattatcaaaagacaaaatatatgtctttggagaagaacttttacgaggaacctttttcgatttcaaaccatgttgtt |
1824237 |
T |
|
| Q |
210 |
gttcttgttcttgtggttgattttgttg |
237 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
1824238 |
gttcttgttcttgtggttgatgttgttg |
1824265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 1824021 - 1824109
Alignment:
| Q |
11 |
tgtgaactgcttctacctctcttcactctat---tttgttgatttattttcatttcactcttttgattactttcatggctacgtttatt |
96 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||| |||||| |||| |||||| |||||||| ||||||||||||| |
|
|
| T |
1824021 |
tgtgaactgcttctacctttcttcactccattgatttgttgattagttttcacttcagctttttgagtactttcacggctacgtttatt |
1824109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University