View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_32 (Length: 419)
Name: NF9985A_low_32
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 44933592 - 44933735
Alignment:
| Q |
16 |
atcaagtatgaaaggaaagttgtgtcactcatgcggtgtggcttgaaaatattattaccttttcgacattctgaagtcgttgcaatgaagttgtctggcc |
115 |
Q |
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| T |
44933592 |
atcaagtatgaaaggaaagttgtgtcactcatgcggtgtggcttgaaaatattattaccttttcgacattctgaagtcgttgcaatgaagttgtctggcc |
44933691 |
T |
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| Q |
116 |
ctgtgaatccattgatgttgcttcaaaactgtacaataagtatt |
159 |
Q |
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| T |
44933692 |
ctgtgaatccattgatgttgcttcaaaactgtacaataagtatt |
44933735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 241 - 395
Target Start/End: Original strand, 44934679 - 44934836
Alignment:
| Q |
241 |
cctaatattttaagaaccgcacaagttggactatgcagaattatcatactacaaacagaagataaaatgtaagctccaatcaatttttacgcaacactaa |
340 |
Q |
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| T |
44934679 |
cctaatattttaagaaccgcacaagttggactacgcagaattatcatactacaaacagaagataaaatgtaagctccaatcaatttttacgcaacactaa |
44934778 |
T |
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| Q |
341 |
atcattttttctaagc---agtaaattgttttgggctttggcttcaaattgtactgta |
395 |
Q |
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| T |
44934779 |
atcattttttctaagcagtagtaaattgttttgggctttggcttcaaattgtactgta |
44934836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 7465054 - 7464934
Alignment:
| Q |
18 |
caagtatgaaaggaaagttgtgtcactcatgcggtgtggcttgaaaatattattaccttttcgacattctgaagtcgttgcaatgaagttgtctggccct |
117 |
Q |
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| T |
7465054 |
caagtatgagtggaaagttgtgtcactcatgcgatgatgcttgaaaatattattaccttttccacattctcaagtcgttgcaatgaagttgtctggccct |
7464955 |
T |
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| Q |
118 |
gtgaatccattgatgttgctt |
138 |
Q |
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| T |
7464954 |
gtgaatccattgatgttgctt |
7464934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 249 - 362
Target Start/End: Complemental strand, 7464841 - 7464729
Alignment:
| Q |
249 |
tttaagaaccgcacaagttggactatgcagaattatcatactacaaacagaagataaaatgtaagctccaatcaatttttacgcaacactaaatcatttt |
348 |
Q |
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||||||||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
7464841 |
tttaagaaccgcacaagttagattatgcagacttatcataccacagacagaagataaaatgtaagctccaatcaattttaacgcaacactaaatcat-tt |
7464743 |
T |
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| Q |
349 |
ttctaagcagtaaa |
362 |
Q |
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| T |
7464742 |
ttctaagcagtaaa |
7464729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 1286440 - 1286488
Alignment:
| Q |
252 |
aagaaccgcacaagttggactatgcagaattatcatactacaaacagaa |
300 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||||| |||| |
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| T |
1286440 |
aagaaccacacaagttggattatgcagatttatcatactacaaatagaa |
1286488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 1196120 - 1196160
Alignment:
| Q |
260 |
cacaagttggactatgcagaattatcatactacaaacagaa |
300 |
Q |
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| T |
1196120 |
cacaagttggattatgcagatttatcatactacaaatagaa |
1196160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 20554355 - 20554403
Alignment:
| Q |
252 |
aagaaccgcacaagttggactatgcagaattatcatactacaaacagaa |
300 |
Q |
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||||||| ||||||||||| |||| ||| ||||||||||||||| |||| |
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| T |
20554355 |
aagaaccacacaagttggattatgtagatttatcatactacaaatagaa |
20554403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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