View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_320 (Length: 244)
Name: NF9985A_low_320
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_320 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 33262239 - 33262054
Alignment:
| Q |
11 |
tgaatgacccaaaatcattgagctcagctcttctgaagttgggatgttgaaaggcagacttgctggcccttgcaatgtggcattctgcggttgcaaacta |
110 |
Q |
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| T |
33262239 |
tgaatgacccaaaatcattgagctcagctcttctgaaattgggatgttgaaaggcagacttgttggcccttgcagtgtggcattctgcggttgcaaacta |
33262140 |
T |
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| Q |
111 |
gtcattgttgacccctccaatatggcagtttatggttgcagatgactaattgctggcccttccaacatggcactctgtggttgcaa |
196 |
Q |
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| T |
33262139 |
gtcattgttgacccctccaatatggcagttcgtggttgcagattactaattgatggcccttccaacatggcagtctgtggtagcaa |
33262054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 33262025 - 33261974
Alignment:
| Q |
180 |
gcactctgtggttgcaactcagtcatcgctggcccttgcaatatcgctctct |
231 |
Q |
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| T |
33262025 |
gcactctgtggttccaactcagtcatcgctggcccttgcaatatcgctctct |
33261974 |
T |
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