View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_322 (Length: 244)

Name: NF9985A_low_322
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_322
NF9985A_low_322
[»] chr8 (7 HSPs)
chr8 (13-222)||(14327123-14327332)
chr8 (73-150)||(4479734-4479812)
chr8 (74-134)||(1230668-1230729)
chr8 (73-120)||(3672637-3672685)
chr8 (74-146)||(30429218-30429290)
chr8 (78-123)||(26885656-26885702)
chr8 (74-123)||(26886060-26886110)
[»] chr6 (6 HSPs)
chr6 (73-152)||(12256469-12256548)
chr6 (74-150)||(12735234-12735311)
chr6 (74-120)||(31895282-31895328)
chr6 (75-150)||(16890439-16890515)
chr6 (76-134)||(1989050-1989108)
chr6 (78-123)||(7288956-7289001)
[»] chr3 (5 HSPs)
chr3 (75-152)||(15873030-15873107)
chr3 (75-129)||(4668678-4668733)
chr3 (75-120)||(28244125-28244171)
chr3 (79-148)||(29791774-29791844)
chr3 (92-148)||(19126670-19126727)
[»] chr4 (8 HSPs)
chr4 (74-134)||(39606574-39606634)
chr4 (74-123)||(40172064-40172113)
chr4 (74-139)||(21465604-21465670)
chr4 (74-123)||(43722758-43722808)
chr4 (73-134)||(51002279-51002341)
chr4 (79-134)||(7739217-7739273)
chr4 (74-126)||(10573648-10573700)
chr4 (74-126)||(30893444-30893496)
[»] chr7 (8 HSPs)
chr7 (75-126)||(23198764-23198816)
chr7 (74-120)||(27993050-27993097)
chr7 (74-120)||(47677598-47677645)
chr7 (74-123)||(22267574-22267624)
chr7 (74-123)||(36755008-36755057)
chr7 (74-123)||(36760805-36760854)
chr7 (73-112)||(1399154-1399194)
chr7 (73-120)||(10025986-10026034)
[»] chr5 (8 HSPs)
chr5 (75-141)||(14880406-14880473)
chr5 (73-123)||(9584591-9584642)
chr5 (78-152)||(133554-133628)
chr5 (76-129)||(16193102-16193156)
chr5 (75-123)||(3156528-3156577)
chr5 (67-123)||(5739115-5739172)
chr5 (73-120)||(8543568-8543616)
chr5 (78-125)||(41344573-41344621)
[»] chr2 (8 HSPs)
chr2 (74-123)||(17413350-17413400)
chr2 (74-123)||(17736786-17736836)
chr2 (75-119)||(22558971-22559016)
chr2 (74-134)||(42475117-42475178)
chr2 (76-123)||(4226989-4227037)
chr2 (74-117)||(17779016-17779060)
chr2 (75-119)||(21929465-21929509)
chr2 (79-138)||(32957546-32957606)
[»] chr1 (8 HSPs)
chr1 (79-138)||(20711208-20711268)
chr1 (76-123)||(51046137-51046185)
chr1 (74-123)||(43840343-43840393)
chr1 (78-134)||(21041341-21041398)
chr1 (79-123)||(45701326-45701371)
chr1 (82-134)||(52262173-52262226)
chr1 (78-141)||(3573325-3573388)
chr1 (74-113)||(6423790-6423830)
[»] scaffold0012 (1 HSPs)
scaffold0012 (74-123)||(118812-118862)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 14327123 - 14327332
Alignment:
Q  13 atattaattgacgatatttcgtacactaattttttcgctacaaatcatatgaaagcacagctgtcctcgtgagtttaactcagttggttgaacaatgcat 112  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| | ||||  |||  ||||||||||| ||||| |||    
T  14327123 atattaattgacgatattttgtacactgattttttcgctacaaatcatatgaaagcacaactgtctttgtgaacttagttcagttggttggacaatacat 14327222  T
Q  113 taaatatgtaaagtttgaggtttaaatcctggccactaccnnnnnnntatgaaaacacagcaggcaatgggagaaaactctgtgaaaagaaatgattttt 212  Q
     ||||||||||||||||||||| |||| ||| ||||||||       ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  14327223 caaatatgtaaagtttgaggttcaaattctgaccactacctaaaaaatatgaaaacacagcaggcaatgggagaaaactctacgaaaagaaatgattttt 14327322  T
Q  213 catgctaaca 222  Q
    ||||||||||    
T  14327323 catgctaaca 14327332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 4479734 - 4479812
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttggttg-aacaatgcattaaatatgtaaagtttgaggtttaaatcctggccacta 150  Q
    ||||| ||||||||||||||||| |||||| |||||||||| |||||| ||||||||| |||| |||||  ||||||||    
T  4479734 ctgtcttcgtgagtttaactcagctggttggaacaatgcataaaatatataaagtttggggttcaaatctcggccacta 4479812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 1230729 - 1230668
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    |||||||| ||||||||||||||||||  ||||||||||| | |||||||| ||||||||||    
T  1230729 tgtcctcgcgagtttaactcagttggtaggaacaatgcataatatatgtaaggtttgaggtt 1230668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 3672685 - 3672637
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttggttga-acaatgcattaaatatg 120  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  3672685 ctgtccttgtgagtttaactcagttggttgagacaatgcataaaatatg 3672637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 30429218 - 30429290
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagtttgaggtttaaatcctggcc 146  Q
    ||||||||| || ||||||||||||||||||||||  || ||||||| || ||| | |||||||| |||||||    
T  30429218 tgtcctcgtaagcttaactcagttggttgaacaatatataaaatatgcaaggttcggggtttaaaccctggcc 30429290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 26885702 - 26885656
Alignment:
Q  78 ctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  26885702 ctcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaa 26885656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 26886110 - 26886060
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    ||||||||||||||||||| ||||||| || ||||||||| ||||||||||    
T  26886110 tgtcctcgtgagtttaacttagttggtatggacaatgcataaaatatgtaa 26886060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 12256469 - 12256548
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagtttgaggtttaaatcctggccactacc 152  Q
    ||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| || |||||||| |||| ||||||||    
T  12256469 ctgtcctcgtgagcttagctcagttggttgaataatgcataaaatatgtaaagtctggggtttaaaccctgaccactacc 12256548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 12735311 - 12735234
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggtt-gaacaatgcattaaatatgtaaagtttgaggtttaaatcctggccacta 150  Q
    |||||||||||| ||||||||||||||| | ||||||||| ||||||| || ||||| |||| ||| |||||||||||    
T  12735311 tgtcctcgtgagcttaactcagttggttgggacaatgcataaaatatgcaaggtttggggttcaaaccctggccacta 12735234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 31895282 - 31895328
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatg 120  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||    
T  31895282 tgtcctcgtgagcttaactcagttggttggacaatgcatcaaatatg 31895328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 16890515 - 16890439
Alignment:
Q  75 gtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtttaaatcctggccacta 150  Q
    ||||||||||| |||||| ||||||| || ||||||||| |||||||||| || | ||||| ||||| |||||||||    
T  16890515 gtcctcgtgagcttaacttagttggtatggacaatgcataaaatatgtaaggtctaaggttcaaatcatggccacta 16890439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 1989108 - 1989050
Alignment:
Q  76 tcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    |||||||||| ||||||||||||||   ||||||||| | |||||||| ||||||||||    
T  1989108 tcctcgtgagcttaactcagttggtatgacaatgcataatatatgtaaggtttgaggtt 1989050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 7288956 - 7289001
Alignment:
Q  78 ctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaa 123  Q
    |||||||| ||| |||||||||||||||||| ||| ||||||||||    
T  7288956 ctcgtgagcttagctcagttggttgaacaatacatcaaatatgtaa 7289001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 15873107 - 15873030
Alignment:
Q  75 gtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagtttgaggtttaaatcctggccactacc 152  Q
    ||||||||||| ||| |||||||||||||||| ||||| |||||| |||||| ||||||| |||||||| ||||||||    
T  15873107 gtcctcgtgagcttagctcagttggttgaacagtgcatcaaatatttaaagtctgaggttcaaatcctgaccactacc 15873030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 4668678 - 4668733
Alignment:
Q  75 gtcctcgtgagtttaactcagttggtt-gaacaatgcattaaatatgtaaagtttg 129  Q
    ||||||||||||||||||| ||| ||| ||||||||||| | ||||||||||||||    
T  4668678 gtcctcgtgagtttaactcggttagtttgaacaatgcataatatatgtaaagtttg 4668733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 28244171 - 28244125
Alignment:
Q  75 gtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatg 120  Q
    ||||||||||| |||||||||||||| |||||||||||| |||||||    
T  28244171 gtcctcgtgagcttaactcagttggtatgaacaatgcataaaatatg 28244125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 29791774 - 29791844
Alignment:
Q  79 tcgtgagtttaactcagttggttg-aacaatgcattaaatatgtaaagtttgaggtttaaatcctggccac 148  Q
    |||||||||||||||||||| | | |||||| ||| | |||||||| |||||||||| ||||| |||||||    
T  29791774 tcgtgagtttaactcagttgatagaaacaatacataatatatgtaaggtttgaggttcaaatcttggccac 29791844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 19126727 - 19126670
Alignment:
Q  92 tcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtttaaatcctggccac 148  Q
    ||||||||| || ||||||||| |||||||||| ||||| |||| |||||||||||||    
T  19126727 tcagttggtatggacaatgcataaaatatgtaaggtttggggttcaaatcctggccac 19126670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 39606634 - 39606574
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    |||||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||    
T  39606634 tgtcctcgtgagcttagctcagttggttgaacaatgtataaaatatgtaaagttcgaggtt 39606574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 40172064 - 40172113
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaa 123  Q
    |||||||||||| |||||||||||||||| | ||||||| ||||||||||    
T  40172064 tgtcctcgtgagcttaactcagttggttggaaaatgcatcaaatatgtaa 40172113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 21465604 - 21465670
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtttaaat 139  Q
    |||||||||||||||||||||||| ||  | ||||||||| | |||||||| ||||||| |||||||    
T  21465604 tgtcctcgtgagtttaactcagttagtaaggacaatgcataatatatgtaaggtttgagttttaaat 21465670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 43722758 - 43722808
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    ||||||||||||||||||||||||||| || ||||||||| | ||||||||    
T  43722758 tgtcctcgtgagtttaactcagttggtatggacaatgcataatatatgtaa 43722808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 51002279 - 51002341
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    ||||||||||||| |||||||||||||| |  ||||||||| ||||||| || ||||||||||    
T  51002279 ctgtcctcgtgagcttaactcagttggtatagacaatgcataaaatatgcaaggtttgaggtt 51002341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 7739273 - 7739217
Alignment:
Q  79 tcgtgagtttaactcagttggttga-acaatgcattaaatatgtaaagtttgaggtt 134  Q
    ||||||| |||| |||||||||||| ||||||||| |||||||||| || |||||||    
T  7739273 tcgtgagattaattcagttggttgagacaatgcatcaaatatgtaaggtctgaggtt 7739217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 10573700 - 10573648
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagt 126  Q
    |||| ||||||| |||||||||||||||| |||||||||  ||||| ||||||    
T  10573700 tgtcatcgtgagcttaactcagttggttggacaatgcatctaatatataaagt 10573648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 30893496 - 30893444
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagt 126  Q
    ||||||||||||  ||||||||||||| ||||||||||| | ||||| |||||    
T  30893496 tgtcctcgtgagcataactcagttggtagaacaatgcatgatatatgcaaagt 30893444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 23198816 - 23198764
Alignment:
Q  75 gtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagt 126  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  23198816 gtcctcgtgagtttaactcagttggtatgaacaatgcataaaatatgcaaagt 23198764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 27993097 - 27993050
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatg 120  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||||    
T  27993097 tgtcctcgtgagcttaactcagttggtatgaacaatgcataaaatatg 27993050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 47677645 - 47677598
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggtt-gaacaatgcattaaatatg 120  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  47677645 tgtcctcgtgagtttagctcagttggttagaacaatgcataaaatatg 47677598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 22267574 - 22267624
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttga-acaatgcattaaatatgtaa 123  Q
    ||||||||||||||||||||||||||| || ||||||||| | ||||||||    
T  22267574 tgtcctcgtgagtttaactcagttggtagagacaatgcataatatatgtaa 22267624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 36755008 - 36755057
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaa 123  Q
    |||||||||||| |||||||||||||| | ||||||||| | ||||||||    
T  36755008 tgtcctcgtgagcttaactcagttggtaggacaatgcataatatatgtaa 36755057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 36760805 - 36760854
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaa 123  Q
    |||||||||||| |||||||||||||| | ||||||||| | ||||||||    
T  36760805 tgtcctcgtgagcttaactcagttggtaggacaatgcataatatatgtaa 36760854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 1399154 - 1399194
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttggt-tgaacaatgcat 112  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  1399154 ctgtcctcgtgagtttaactcagttggtatggacaatgcat 1399194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 10025986 - 10026034
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttgg-ttgaacaatgcattaaatatg 120  Q
    ||||||||||||| ||||||||||||| ||| ||||||||| |||||||    
T  10025986 ctgtcctcgtgagcttaactcagttggtttggacaatgcataaaatatg 10026034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 14880406 - 14880473
Alignment:
Q  75 gtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtttaaatcc 141  Q
    ||||||||||| |||||||||||||| |||||||||||  ||||||  ||||||||||||| ||||||    
T  14880406 gtcctcgtgagcttaactcagttggtatgaacaatgcagaaaatatacaaagtttgaggttcaaatcc 14880473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 9584591 - 9584642
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttggtt-gaacaatgcattaaatatgtaa 123  Q
    ||||| |||||||||||||||||||| || ||||||||||| ||||||||||    
T  9584591 ctgtcatcgtgagtttaactcagttgattggaacaatgcataaaatatgtaa 9584642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 133628 - 133554
Alignment:
Q  78 ctcgtgagtttaactcagttggttgaacaatgcattaaatatgtaaagtttgaggtttaaatcctggccactacc 152  Q
    |||||||| ||| |||||||||||| || |||||| |||||||||| ||||| | || ||| || ||||||||||    
T  133628 ctcgtgagcttagctcagttggttggacgatgcataaaatatgtaaggtttgggtttcaaaccccggccactacc 133554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 16193102 - 16193156
Alignment:
Q  76 tcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttg 129  Q
    ||||||||||||||  ||||||||| |||||||||||| |||||||||| |||||    
T  16193102 tcctcgtgagtttagttcagttggtatgaacaatgcataaaatatgtaaggtttg 16193156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 3156528 - 3156577
Alignment:
Q  75 gtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    |||||||||||||||||||||||||| || | ||||||| ||||||||||    
T  3156528 gtcctcgtgagtttaactcagttggtatggataatgcataaaatatgtaa 3156577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 5739172 - 5739115
Alignment:
Q  67 gcacagctgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    ||||| |||||||||| || ||||||||||||||  ||||||||||||| ||||||||    
T  5739172 gcacaactgtcctcgtcagcttaactcagttggtaggaacaatgcattatatatgtaa 5739115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 8543568 - 8543616
Alignment:
Q  73 ctgtcctcgtgagtttaactcagttgg-ttgaacaatgcattaaatatg 120  Q
    ||||||||||||| ||||||||||||| ||| ||||||||| |||||||    
T  8543568 ctgtcctcgtgagcttaactcagttggtttggacaatgcataaaatatg 8543616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 41344573 - 41344621
Alignment:
Q  78 ctcgtgagtttaactcagttggttga-acaatgcattaaatatgtaaag 125  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||| ||||    
T  41344573 ctcgtaagtttaactcagttggttgagacaatgcataaaatatgcaaag 41344621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 17413400 - 17413350
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggtt-gaacaatgcattaaatatgtaa 123  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  17413400 tgtcctcgtgagtttaactcagttggttggaataatgcataaaatatgtaa 17413350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 17736786 - 17736836
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    |||||||||||| ||| |||||||||| |||||||||||| ||||||||||    
T  17736786 tgtcctcgtgagcttagctcagttggtatgaacaatgcataaaatatgtaa 17736836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 22558971 - 22559016
Alignment:
Q  75 gtcctcgtgagtttaactcagttgg-ttgaacaatgcattaaatat 119  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  22558971 gtcctcgtgagtttaactcagttggtttggacaatgcataaaatat 22559016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 42475178 - 42475117
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    |||||||||||| |||||||||||||| | |||||||||| ||||||| || || |||||||    
T  42475178 tgtcctcgtgagcttaactcagttggtataaacaatgcataaaatatgcaaggtctgaggtt 42475117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 4227037 - 4226989
Alignment:
Q  76 tcctcgtgagtttaactcagttggttg-aacaatgcattaaatatgtaa 123  Q
    |||||||||| |||||||| ||||||| |||||||||| ||||||||||    
T  4227037 tcctcgtgagcttaactcaattggttggaacaatgcataaaatatgtaa 4226989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 17779060 - 17779016
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggttga-acaatgcattaaat 117  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||    
T  17779060 tgtcctcgtgagtttaactcagttggtagagacaatgcataaaat 17779016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 21929465 - 21929509
Alignment:
Q  75 gtcctcgtgagtttaactcagttggttgaacaatgcattaaatat 119  Q
    ||||||||||| ||| |||||||||||| ||||||||| ||||||    
T  21929465 gtcctcgtgagcttagctcagttggttggacaatgcataaaatat 21929509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 32957606 - 32957546
Alignment:
Q  79 tcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtttaaa 138  Q
    ||||||||||| ||| |||||| |||||||||||| | |||||||| ||||| ||||||||    
T  32957606 tcgtgagtttagctcggttggtatgaacaatgcataatatatgtaaggtttggggtttaaa 32957546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 20711268 - 20711208
Alignment:
Q  79 tcgtgagtttaactcagttggttg-aacaatgcattaaatatgtaaagtttgaggtttaaa 138  Q
    |||||||||||||||||||| | | |||| ||||| |||||||||| ||||||||||||||    
T  20711268 tcgtgagtttaactcagttgctaggaacagtgcataaaatatgtaaggtttgaggtttaaa 20711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 51046137 - 51046185
Alignment:
Q  76 tcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  51046137 tcctcgtgagtttaactcagttggtatgaacaatacataaaatatgtaa 51046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 43840393 - 43840343
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    ||||||||||||||||||||||||| | || ||||||||| ||||||||||    
T  43840393 tgtcctcgtgagtttaactcagttgatatggacaatgcataaaatatgtaa 43840343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 21041341 - 21041398
Alignment:
Q  78 ctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    |||||||||||| |||||||||| || ||||||||| ||||||| || ||||||||||    
T  21041341 ctcgtgagtttacctcagttggtatggacaatgcataaaatatgaaatgtttgaggtt 21041398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 45701326 - 45701371
Alignment:
Q  79 tcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaa 123  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||||    
T  45701326 tcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaa 45701371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 52262226 - 52262173
Alignment:
Q  82 tgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtt 134  Q
    |||| |||||||||||||| |||||||||||| ||||||| |||||| ||||||    
T  52262226 tgagcttaactcagttggtatgaacaatgcataaaatatgcaaagttcgaggtt 52262173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 3573388 - 3573325
Alignment:
Q  78 ctcgtgagtttaactcagttggt-tgaacaatgcattaaatatgtaaagtttgaggtttaaatcc 141  Q
    |||||||| ||||||||||||||  ||||||||||| | |||||||| |||||| ||||||||||    
T  3573388 ctcgtgagcttaactcagttggtaggaacaatgcataatatatgtaaggtttga-gtttaaatcc 3573325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 6423830 - 6423790
Alignment:
Q  74 tgtcctcgtgagtttaactcagttggt-tgaacaatgcatt 113  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  6423830 tgtcctcgtgagcttaactcagttggtatgaacaatgcatt 6423790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 118812 - 118862
Alignment:
Q  74 tgtcctcgtgagtttaactcagttgg-ttgaacaatgcattaaatatgtaa 123  Q
    |||||||||||| ||| ||||||||| ||||||||||||| ||||||||||    
T  118812 tgtcctcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaa 118862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University