View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_323 (Length: 244)
Name: NF9985A_low_323
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_323 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 4702461 - 4702590
Alignment:
| Q |
13 |
atactctcatttgatttgttagagcaaattaatcaaagttaaattgaatattataatatgtgttacattatataccaccactagtctctggtgattttgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4702461 |
atactctcatttgatttgttagagcaaattaatcaaagttaaattgaatattataatatgtgttacattatataccaccactagtctctggtgattttgc |
4702560 |
T |
|
| Q |
113 |
tattacttcttttatttacagactaaggtt |
142 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
4702561 |
tattgcttcttttatttacagactaaggtt |
4702590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 4702586 - 4702642
Alignment:
| Q |
168 |
aggtttgttgctttgctaatttttgttgttgtgaataatttgttaaatcatacgatg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4702586 |
aggtttgttgctttgctaatttttgttgttgtgaataatttgttaaatcataagatg |
4702642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 4705785 - 4705861
Alignment:
| Q |
63 |
ttataatatgtgttacattatataccaccactagtctctggtgattttgcta-ttacttcttttatttacagactaa |
138 |
Q |
| |
|
||||||||| | ||||||||| |||| | |||| |||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
4705785 |
ttataatatctattacattatgtaccgctactaatctctggtgattttgctatttacttctttcatttatagactaa |
4705861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 4705890 - 4705973
Alignment:
| Q |
144 |
tcctcatatttgaacttgttaagcaggtttgttgctttgctaatttttgttgttgtgaata--atttgttaaatcatacgatgt |
225 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||| || || |||||||| ||||||| || | ||||| ||||||||| ||||| |
|
|
| T |
4705890 |
tcctcagatttgaacttgttaaacatgtttgttcctctgataattttttttgttgttaacaatatttgataaatcatatgatgt |
4705973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University