View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_340 (Length: 241)
Name: NF9985A_low_340
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_340 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 27492130 - 27491926
Alignment:
| Q |
20 |
ataaatatcacccattaaaatataaatcactttatattcaatt-atttttaatggtactcaatttcaaaaagttaattcactcaaaacatttattatcac |
118 |
Q |
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| T |
27492130 |
ataaatatcacacattaaaacataaatcacttcatattaaattcatttttaatcgtactcaatttcaaaaagttaattcactcaaaacatttattatcac |
27492031 |
T |
|
| Q |
119 |
tagaaaatgaagcacacatcactttaagcacaaccaattttacaaaatgaattcattnnnnnnnttggtttgtgtcacatacataaccaaacacccacat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |
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|
| T |
27492030 |
tagaaaatgaagcacacatcactttaagcacaaccaattttacaaaatgaattcattaaaaaaattggtttgtgtcacatacat-accaaacacacacat |
27491932 |
T |
|
| Q |
219 |
gctcat |
224 |
Q |
| |
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|||||| |
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|
| T |
27491931 |
gctcat |
27491926 |
T |
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