View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_341 (Length: 240)
Name: NF9985A_low_341
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_341 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 38930669 - 38930797
Alignment:
| Q |
100 |
tgtaattaatactttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttgttnnnnnnnntaatat |
199 |
Q |
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| T |
38930669 |
tgtaattaatactttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttattaaaaaaaaaaatat |
38930768 |
T |
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| Q |
200 |
aggcttagtatacaaccttaaccttgatg |
228 |
Q |
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| T |
38930769 |
aggcttagtatacaaccttaaccttgatg |
38930797 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38930198 - 38930295
Alignment:
| Q |
1 |
acacaatttcaccaaaatcttaaagcatcgatagagtatacaaatcctctcaagtatgtggaactaaacatttttatcaaaagcagaactcttattta |
98 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38930198 |
acacattttcaccaaaatcttaaagtatcgatagagtatacgaatcctctcaagcatgtggaactaaacatttttatcaaaagcagaactcttattta |
38930295 |
T |
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