View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_342 (Length: 240)
Name: NF9985A_low_342
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_342 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 33790978 - 33791189
Alignment:
| Q |
21 |
aaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcag |
120 |
Q |
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| T |
33790978 |
aaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcag |
33791077 |
T |
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| Q |
121 |
acataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttaa |
220 |
Q |
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| T |
33791078 |
acataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttaa |
33791177 |
T |
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| Q |
221 |
tgatgtccatct |
232 |
Q |
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|||||| ||||| |
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| T |
33791178 |
tgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
92 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
191 |
Q |
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||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
192 |
agacgtgatggatta |
206 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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