View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_351 (Length: 238)
Name: NF9985A_low_351
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_351 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 35449820 - 35450052
Alignment:
| Q |
1 |
agagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaagca |
100 |
Q |
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| T |
35449820 |
agagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaagca |
35449919 |
T |
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| Q |
101 |
ttgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaattat |
200 |
Q |
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| T |
35449920 |
ttgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaattat |
35450019 |
T |
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| Q |
201 |
tgatcaatcaatgattgaagtactaacaccaaa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35450020 |
tgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Back To:
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
1 |
agagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
69 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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