View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_358 (Length: 236)
Name: NF9985A_low_358
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_358 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 40659955 - 40660175
Alignment:
| Q |
18 |
acatcaacaaacaacaa-gaagcacatcatggaccatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctc |
116 |
Q |
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| T |
40659955 |
acatcaacaaacaacaaagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctc |
40660054 |
T |
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| Q |
117 |
caaacaggacaacaaccaagttcaaccttcacaaagcatgac-nnnnnnnnccaaaacttaacagaacaaaatctgcaccactagccacacaccaccttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40660055 |
caaacaggacaacaaccaagttcaaccttcacaaagcatgacaaaaacaaaccaaaacttaacagaaaaaaatctgcaccactagccacacaccaccttt |
40660154 |
T |
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| Q |
216 |
taaatcctacagcagtgatgt |
236 |
Q |
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|||||||| |||||||||||| |
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| T |
40660155 |
taaatcctgcagcagtgatgt |
40660175 |
T |
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