View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_359 (Length: 235)
Name: NF9985A_low_359
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_359 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 41405396 - 41405477
Alignment:
| Q |
150 |
ccaaatgaacaaattgctgagcttattaagcaatacaaaggatacaatccctacatgactcaatactatcatgttcagagtg |
231 |
Q |
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| T |
41405396 |
ccaaatgaacaaattgctgagcttattaagcaatacaaaggatacaatccctacatgactcaatactatcatgttcagagtg |
41405477 |
T |
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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 41405266 - 41405337
Alignment:
| Q |
2 |
catagaccctgttgatgttgtgagcaaattgagaaaaacttggcacacagaaattttaacggttgggccggc |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41405266 |
catagaccctgttgatgttgtgagcaaattgagaaaaacttggcacacagaaattttaacggttgggccggc |
41405337 |
T |
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